LOC117597935 (LOC108274854)


Basic Information

Item Value
gene id LOC117597935
gene name LOC108274854
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 675824 ~ 677329 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578676.1
gtgtgtgtggtcactgtAATGTAACAGAGGTTTTTGTACGACGGCTTCATTAGAATGTATCACTGTGGTACACTTTCGGTGGAGGAACCAAACTCATCATCACCGGTCCCACGGTGAAGCCCTCCGTGTCtctgctccctccctcctctctgcagctgtctgagggatcggcctcgctgctctgcctgctgtctgCCTACTCTCCACAGGGGGCGCTGGTGAGCTGGACAGTGGACGGCTCCCAGGTGAAGGACGGGGTTCTGACCAgcgcagaagaacagaagaaggacggttacacacgcagcagcaccctgaccctcagcaaagcactctgggaaaagggggaggagttTGTCTGTACGGTCTCCCATGCCGGCGTCAATCATCCGGTCACGTTCAGAAAGAGCCAGTGTGACGCCTAACAGCTCCAAGATACAATTTAACACTGAGCTGCTTACACATCCATCTACAATAGAGTTTCAGTTCtacacaatgctgacatttctgtctttactctcttcactgtcctgttgctcttcctgtagttttgctctgctgaaataaagcttccttttgga

Function

NR:

description
PREDICTED: signal-regulatory protein beta-1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578676.1 True 578 lncRNA 0.52 2 675824 677329

Neighbor

gene id symbol gene type direction distance location
LOC113525101 NA coding upstream 231376 438027 ~ 444448 (+)
LOC113525100 LOC108274824 coding upstream 345840 324146 ~ 329984 (+)
LOC113525382 gja9 coding upstream 542417 127708 ~ 133407 (+)
fabp10b LOC108274544 coding upstream 548486 115546 ~ 127338 (+)
LOC113525374 LOC108274795 coding upstream 560888 102820 ~ 114936 (+)
LOC113523903 LOC108274807 coding downstream 785116 1462445 ~ 1473080 (+)
LOC113523877 NA coding downstream 819144 1496473 ~ 1505004 (+)
LOC113523893 mterf1 coding downstream 857538 1534867 ~ 1540467 (+)
LOC113523867 tmem42,LOC108274871,LOC103045080,LOC107394544 coding downstream 913529 1590858 ~ 1597758 (+)
ehmt2 ehmt2 coding downstream 945437 1622766 ~ 1646549 (+)
G141722 NA non-coding upstream 67192 478072 ~ 608632 (+)
LOC117598182 NA non-coding upstream 67579 600873 ~ 608245 (+)
G141731 NA non-coding upstream 69556 549350 ~ 606268 (+)
G141738 NA non-coding upstream 85460 588877 ~ 590364 (+)
G141711 NA non-coding upstream 173418 415274 ~ 502406 (+)
LOC113525695 LOC108274854 non-coding downstream 47230 724559 ~ 725725 (+)
LOC117598010 LOC108274854 non-coding downstream 63500 740829 ~ 742229 (+)
LOC117598011 LOC108274854 non-coding downstream 72366 749695 ~ 752390 (+)
LOC117598138 LOC108274854 non-coding downstream 133371 810700 ~ 812196 (+)
G141846 NA non-coding downstream 141272 818601 ~ 819087 (+)
G141647 NA other upstream 440303 212948 ~ 235521 (+)
G141566 LOC108274831 other upstream 579764 93086 ~ 96060 (+)
G141824 LOC108274854 other downstream 89726 767055 ~ 895584 (+)
LOC117598023 LOC108274854 other downstream 190340 867669 ~ 869091 (+)
G141825 LOC108274854,LOC108279645 other downstream 261386 938715 ~ 1209873 (+)
LOC117598144 NA other downstream 264394 941723 ~ 979635 (+)
dus3l dus3l other downstream 870928 1548257 ~ 1559910 (+)

Expression


Co-expression Network