LOC117597939


Basic Information

Item Value
gene id LOC117597939
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 17075246 ~ 17078085 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578684.1
TAACCAACAATTctggttgtgttttattgtgtcttACATAAAAGTTACTTTGCCAATGTCTTTTATTTAGATGGTACGTAGCAATAAGTGCATAGGGTACACACGATATGTATGCAAATTTGACATTATAATGCTATGTCACATGATAGCAGCATGACCTTATTCTGGTCTAACAGTTCTGGTCATTAAAACAGTTCCATTTAAATGACAGGACAAAGCAGAGTTAACCAACtgacaaaataacattttttgtaGATATTGAGTTTTTTTCATGCTGAATGAATATGTAATGAGGAAATCTATCTTTCAAACATGGCTgtagaaatataatgtttactACTCTTTACTGTGTGATTTTTAAGAGCCCCCCAGCCTTTCATCCTTTGGGAGGTTTTTCTTAATTTCCTTTCCCAAATGCCTCATAACCTGTACCTTgctataaaatacaaaatgtcatGAGATAATGTAATAAGCTTAACTGAGTGTCACTGCATGATCAAAGGGAGAGTTtgtgaattattttgttttaagatTAAAATAGCTGATATCAGTGCCTGCATATCTTTCAGATGTGATTTGATGTGTGTTGCATCCAGCCATGTTTAAATGCTCAGTGGTGACCTAGCTATGTTTGCCTgagaatatattaataaaaaaaaagattataacaTTTGACATGCTTTCATACTGTTGATAAACCCTGcatttgcattatatttaacacatgcaaatgaaaagcacagctactgtaaaactgtaatgtaTAACAAAGTTCAATAATAATTATGCAGaataaagttaaatataatatttctatattgCTTTCATTATAGTGCCATTGGGTTTTATGAGGTATTTGACTTACCACTAAATAGCTTTACCAGCAATTCAACCATCAGGTACAGGTCAATGTTAGTTTgcgaccacacacacacacacacactcctaggAATGTACATAGGCCATCTggtcttgcacacacacacacacacacacacacacacccagatagGTGTGGCCTGTGGATGCTGTGACACTTGCCATAATTAAGCTTATGGTGTTTGTCTACTTCCCCAGCATGAAGCAGAGCATTGCGCAGTGCCTGTCCAGCATGACTCACGCTGCCCAGACCGGACAGCAGAGACCAAAAGACCAACAATCGAGTGCATAACGCTCACACTGCAGAGTGACACAGACTCACTATACTCAACAAAAAGGTGTGAAAGAGTCACAGGcaaggtgtttcagcctgcaaaccctccactcacaggatgatttttgtttttcacaccattctgtgtaaactctagagactggtgtgaaattttcaggagatcagcaattgaTACTTGCAATTTTGATGGAGATGTAAACGGTTTCTTGATTTTCACACAATTCCACACCTAGCCAGCAGTCTGATGAAAAGGTTGGAGATGAGCTGAGAGCCAGCCAGTGAGATGTCGAGCGCGGCCAGAGGGAGATCTCGGTAAGCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578684.1 True 1495 lncRNA 0.38 3 17075246 17078085

Neighbor

gene id symbol gene type direction distance location
c2cd4a LOC108275248,LOC108433606 coding downstream 185239 16888337 ~ 16890007 (-)
roraa rora,roraa,LOC108433630,LOC106561150,LOC107703215,LOC106573506 coding downstream 274878 16567295 ~ 16800368 (-)
LOC113530224 NA coding downstream 321965 16753176 ~ 16753281 (-)
ice2 ice2 coding downstream 509244 16547325 ~ 16566002 (-)
anxa2a anxa2,anxa2a,LOC108433632,LOC107739086,LOC107724175 coding downstream 528976 16540852 ~ 16546270 (-)
etfa etfa,LOC107712526,LOC107557988 coding upstream 35669 17113754 ~ 17128284 (-)
scaper scaper,LOC107662441,LOC107712524,LOC107688925,LOC106561156 coding upstream 62330 17140415 ~ 17234857 (-)
ctdspl2a ctdspl2a,LOC108275364,LOC107712523,LOC107589331,LOC107688927,LOC107739078,LOC107557990 coding upstream 159028 17237113 ~ 17248412 (-)
sqor sqrdl,LOC107739076,LOC107557991,LOC107662477,LOC102778185 coding upstream 171453 17249538 ~ 17255164 (-)
galk2 galk2,LOC107557993,LOC107688931,LOC107662478,LOC107589326 coding upstream 205939 17284024 ~ 17291324 (-)
G150036 NA non-coding downstream 22734 17028117 ~ 17052512 (-)
G150089 NA non-coding downstream 56063 17018956 ~ 17019183 (-)
G149854 NA non-coding downstream 460830 16612984 ~ 16614416 (-)
G149841 NA non-coding downstream 576785 16496171 ~ 16498461 (-)
G149836 NA non-coding downstream 614201 16460791 ~ 16461045 (-)
G150130 NA non-coding upstream 47329 17125414 ~ 17150481 (-)
G150139 NA non-coding upstream 69816 17147901 ~ 17148608 (-)
G150237 NA non-coding upstream 287365 17365450 ~ 17365787 (-)
G150284 NA non-coding upstream 362788 17440873 ~ 17444825 (-)
G150310 NA non-coding upstream 426201 17504286 ~ 17504936 (-)
LOC113529460 nrg4 other downstream 16340 17053353 ~ 17058906 (-)
acsbg1 acsbg1 other downstream 846912 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 1083152 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 1355671 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1846261 15219970 ~ 15228985 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1126566 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 1225057 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 1226553 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 1275889 18353974 ~ 18364036 (-)
G150991 LOC108436944 other upstream 1347234 18425319 ~ 18428973 (-)

Expression


Co-expression Network