LOC117597941


Basic Information

Item Value
gene id LOC117597941
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 16230614 ~ 16231809 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578686.1
AGAATATCGTAGTAGCCGGTCTCTCGCACCATTTTTGGCCAGCTACAGAACAGGACCAGAGATTAGCCGGTGTCTGCTATAGACGCTGAGCTAGATTATCAGCAAAATAGCGCTCTTAAAGCTAGCGTGCCGGGTAGATGGTGCTGCTGTGACTGAATGAAGATGGCCGCTGCGCCTATATATAAGCGCAGGAGCTGCAGAACTTTCTGGAGCTTTGAAGAACAAGAAAATTCTACAGCCCTCCTCTCCATCCCGAGACCACGAGCTGCTGTTAGAGGGAGCTGGCGAGCCTGTAGAGCAACACTGCTCCTGTGTGGTTGCTCTACAGTAACCTTACCAGTTGTGAAATAATGTTACAGGCatatgtttagaaagaaaaacctAAATACCCAagtaagaataaaacatgagtaGTACATTGATATCTAGGGCTAACCTCACAAATGCACACTTATTCATGTTTAAATCAGTTCctgattttgattggtcaggtgttgattcattttctagaacagcacatCTCAGACAGTTcaggctgcaaggcaaatcacaggtttatccTAATGCACTGGTTTAATACCTTATCATTTCTCTAGTAACAGTTAATTCACAGGCACTTCTGAAGCAGATGCACCACATAAatctaaatgattttaaaaaaaaaaatatttgacaaataaatgcttataattgctgatatggtgacactttctgtaaggagaacatgccatgggagagtcttcaggacagcaGACTGTGCTTTCTGGATTCTCATTAACatcatgagagaaaaaaagagagactggtgagggaagaaTGTGAcaccaggaactaacttgtttcacctGTTCCACAACAGTAAGTGTAACTAtagacagattaaaaatatgatgtcattctttaataaataagaaattgttaGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578686.1 True 924 lncRNA 0.41 2 16230614 16231809

Neighbor

gene id symbol gene type direction distance location
cib2 cib2,LOC103027299,LOC107752320,LOC107573330,LOC104917862 coding downstream 31499 16180917 ~ 16199115 (-)
tbc1d2b tbc1d2b,LOC107698183,LOC102789207 coding downstream 64615 16141596 ~ 16165999 (-)
dapk2b dapk2,dapk2b,LOC107752317,LOC107757761,LOC107659496 coding downstream 89710 16121657 ~ 16140904 (-)
ca12 ca12 coding downstream 186762 16028155 ~ 16043852 (-)
man2c1 man2c1,LOC107752311 coding downstream 205756 16014920 ~ 16024858 (-)
rps27l rps27l,zgc:136826,LOC107598918,LOC107752326 coding upstream 4334 16236143 ~ 16238157 (-)
LOC113530180 LOC108274564 coding upstream 19535 16251344 ~ 16254496 (-)
LOC113529693 LOC108274564,LOC108433637,LOC108441836,LOC107750517 coding upstream 24701 16256510 ~ 16262939 (-)
trpm1b LOC108274564,LOC108433637,LOC107585966,LOC107750517 coding upstream 33753 16265562 ~ 16267986 (-)
otud7a otud7a,LOC108275340,LOC107715690,LOC107659507,LOC107752330,LOC107698115,LOC107550219,LOC107598848 coding upstream 94133 16325942 ~ 16362375 (-)
G149495 NA non-coding downstream 135439 16093072 ~ 16095175 (-)
LOC113529609 NA non-coding downstream 137684 16068429 ~ 16092930 (-)
G149366 NA non-coding downstream 326712 15903692 ~ 15903902 (-)
G149364 NA non-coding downstream 327972 15902440 ~ 15902642 (-)
G149363 cyp11a non-coding downstream 332453 15897890 ~ 15898161 (-)
G149643 NA non-coding upstream 17352 16249161 ~ 16251085 (-)
G149649 NA non-coding upstream 22838 16254647 ~ 16255486 (-)
G149632 klf13,znf746,LOC108274922,LOC107550220,LOC107598847,LOC107752329 non-coding upstream 78081 16309890 ~ 16317926 (-)
G149718 NA non-coding upstream 190857 16422666 ~ 16424604 (-)
G149836 NA non-coding upstream 228982 16460791 ~ 16461045 (-)
acsbg1 acsbg1 other downstream 2280 16141119 ~ 16228334 (-)
islr2 islr2,LOC107662462 other downstream 238520 15981164 ~ 15992094 (-)
LOC113529470 LOC108275326 other downstream 511039 15711993 ~ 15719575 (-)
LOC113529695 NA other downstream 1001629 15219970 ~ 15228985 (-)
dynlrb2 dynlrb2,LOC103025073,LOC106573385 other downstream 1142554 15086113 ~ 15088060 (-)
LOC113529460 nrg4 other upstream 821544 17053353 ~ 17058906 (-)
fnbp4 fnbp4,LOC107753624,LOC107678983,LOC107573585 other upstream 1972842 18204651 ~ 18214487 (-)
etfbkmt etfbkmt other upstream 2071333 18303142 ~ 18305329 (-)
LOC113530223 NA other upstream 2072829 18304638 ~ 18304801 (-)
parp6b parp6,parp6b,LOC108275327,LOC108436940,LOC107661437,LOC107753615,LOC107598827,LOC107665100 other upstream 2122165 18353974 ~ 18364036 (-)

Expression


Co-expression Network