LOC117598079


Basic Information

Item Value
gene id LOC117598079
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 5610562 ~ 5613308 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578802.1
GGGTTGGCTGATAATCGGCGCAAGGACACGCAGCTTCTCCGACacgctgagctgacagaactGATTCCACGCTGAGATGATGAGCAGATTACAGGATTACGGGTTTAAACacagccagcagcagcagcagagcacacacacacactgacctgcagcAGAGGGACGTCTTCACCTCACTACGCTACGTGAAGCTGAGatctccagaacacatcacatttccGCAGCTCGGTCCTTTAGCTCAGTTTGAGCCTCGCGGCTCATTTTAGCAGCTCACAGCTACAGAAAAATTTCGTccacaacccaaaacacacagcatgtattGTGCTTCCTGTATTTGGGTGCATTCAGGATCGAATCACTGCAAGTGAACCGAGCTAGAGTTTGACTGGAACTGAGATCACCTCGCTCAGATGGTCGTGGACCCGTGTGAtcgctgtgttctcacctgcacaGAACCGCGTAAAAGAGGAAAACGCACCAGGGTTCGACTCAAACCGACTACACACTGcttatgtgaaagcacccttacACCAGGCAGTGTCTGACTCATAGCTCATTTCGAGTAAAggaaaaataacaaacacaatctgtataaacatttaaagctAGTAATTTTGAAATAAGAGTTAAAGAGGATTTAAAAAGCTACACATGAGTCATCACCGGTTCCCATACAGAGCCGCAGCCCAGCCCAGGGTTTGTCTCTTTTGACAGCTGACATAAAGGACCTTGAAAGTCAACAGCCGGGCCAATGGGAAGTCAAGAGGATGTGCTGGAGGGCCAATGAGATGACAGAGAAGCGATTTCCCCTGGGGCTCAATTCAGTTCAGGTCTCTTTTGACATGGTCGCTTTTTTATCCGTCTCTTATTTCCTCTCCCATGCTGCACTCGGCTGTGGGATACAGCGCTGAGAACAGAAACGGCTTCTgaaaaaactacacaaaaagcTTTGAAGGAAAAGTTTATTTTCCTAAGAATCCTATTCCTAATCTCTGCACGTTTCAGTACACAATATAGAACCCGCCTCCATGTGTTACATAATTActtattatgaataaaatattattccgggagtctctttgtgtgtgttttttttgtctccagCTTCCTCTCCACACCCTTtcagggaaaaagaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578802.1 True 1143 lncRNA 0.46 2 5610562 5613308

Neighbor

gene id symbol gene type direction distance location
LOC113547141 mchr2,LOC108274669,LOC108436838 coding upstream 27813 5565321 ~ 5582749 (+)
LOC113547138 lrrtm2,LOC107680618,LOC107750357 coding upstream 190402 5414917 ~ 5420160 (+)
LOC117597937 lrrtm2,LOC108274667,LOC107750357,LOC107680618 coding upstream 704699 4902900 ~ 4905863 (+)
si:dkey-206d17.12 LOC108275399 coding upstream 919949 4671050 ~ 4690613 (+)
thrap3b LOC108274713,LOC107734038,LOC107551756 coding upstream 979136 4606321 ~ 4631426 (+)
LOC113547120 LOC108275395,LOC108439812,LOC105903016 coding downstream 225318 5838626 ~ 5850058 (+)
LOC113547110 LOC108275396,LOC108439811,LOC105903007 coding downstream 240922 5854230 ~ 5861207 (+)
n4bp3 LOC108274652 coding downstream 252149 5865457 ~ 5903463 (+)
ppp2caa ppp2ca,LOC107594878,LOC107750370,LOC108439805,LOC105903939 coding downstream 354434 5967742 ~ 5975213 (+)
LOC113547108 LOC108274551 coding downstream 385159 5998467 ~ 6037800 (+)
G143601 NA non-coding upstream 5902 5600363 ~ 5604660 (+)
G143577 NA non-coding upstream 118724 5491294 ~ 5491838 (+)
G143569 NA non-coding upstream 123334 5482618 ~ 5487228 (+)
G143566 NA non-coding upstream 156477 5453159 ~ 5454085 (+)
G143559 NA non-coding upstream 184037 5425417 ~ 5426525 (+)
G143622 synpo non-coding downstream 35786 5649094 ~ 5652886 (+)
G143644 NA non-coding downstream 111572 5724880 ~ 5727587 (+)
G143757 NA non-coding downstream 297675 5910983 ~ 5912741 (+)
G143766 NA non-coding downstream 309503 5922811 ~ 5923752 (+)
G143772 LOC108274654,LOC104947748,LOC106517727,LOC106603477 non-coding downstream 319273 5932581 ~ 5936329 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other upstream 1101314 4484833 ~ 4509248 (+)
G142576 NA other upstream 2148391 3397670 ~ 3462171 (+)
LOC113523845 NA other upstream 2214495 3384180 ~ 3396067 (+)
LOC117598067 NA other upstream 2801925 2559811 ~ 2808637 (+)
gpx3 gpx3 other downstream 127599 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 973903 6587211 ~ 6593605 (+)
G144353 NA other downstream 1166681 6779989 ~ 6919661 (+)
LOC113547145 NA other downstream 1170208 6783516 ~ 6785437 (+)
LOC117598156 NA other downstream 1183664 6796972 ~ 6798904 (+)

Expression


Co-expression Network