LOC117598178


Basic Information

Item Value
gene id LOC117598178
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 2299176 ~ 2300055 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XR_004578869.1
TGAGACCGAAAATTTATTCCGAAAATTTATTCCGCAGATTGAGGCGGAAACGAAACTGCGGATTTAGTCCCGAAGATTGAGACCGAAATTTTGTGCTATAACATCAACATGAGAGGAGGAGCGAAGGAGAACTCTGGCTCAGCGGGAACTCAGAAAATCTGCAGACACAACTCCAGAGAGAATGGATTTCACAaagtctgtgtgtatctgcatcTTGTGCTTCATCATGTATGTGGACTCCCCCTCTGTAGACTCTCAGATCACTGTACCTGCTCGAGAGGGAAACCCAGCGGTCCTGCCATGTAAATTACACGTCACTACTGCCCAAGCACTACATGTCTCATGGAGTATTGGTGATGAGGTTGTGTTTGAGCGATGCGGTGAGGAGACATTTCAGCGATCAGGATTTGAGG

Function

GO: NA

KEGG:

id description
ko04668 TNF signaling pathway
ko04380 Osteoclast differentiation

RNA

RNA id representative length rna type GC content exon number start site end site
XR_004578869.1 True 413 lncRNA 0.47 3 2299176 2300055

Neighbor

gene id symbol gene type direction distance location
LOC117598175 NA coding upstream 4660 2293389 ~ 2294516 (+)
LOC117598177 NA coding upstream 21180 2276999 ~ 2277996 (+)
LOC117598176 NA coding upstream 24413 2273591 ~ 2274763 (+)
LOC117598027 NA coding upstream 39702 2257540 ~ 2259474 (+)
LOC113545612 NA coding upstream 43340 2249486 ~ 2255836 (+)
LOC117598085 NA coding downstream 1311 2301366 ~ 2302762 (+)
LOC117598106 NA coding downstream 74644 2374699 ~ 2383793 (+)
LOC117598108 NA coding downstream 250250 2550305 ~ 2552377 (+)
LOC117598063 NA coding downstream 369072 2669127 ~ 2676154 (+)
LOC117598059 LOC108274858,LOC108274862 coding downstream 453374 2753429 ~ 2756267 (+)
G142391 NA non-coding upstream 13035 2280360 ~ 2286141 (+)
LOC113545551 NA non-coding upstream 72380 2220567 ~ 2226796 (+)
G142305 NA non-coding upstream 173780 2084785 ~ 2125396 (+)
G142302 NA non-coding upstream 195247 2054999 ~ 2103929 (+)
G142301 NA non-coding upstream 246485 2052458 ~ 2052691 (+)
G142411 NA non-coding downstream 58744 2358799 ~ 2359457 (+)
G142429 NA non-coding downstream 72069 2372124 ~ 2372355 (+)
G142420 NA non-coding downstream 91289 2391344 ~ 2396251 (+)
G142433 NA non-coding downstream 101868 2401923 ~ 2671465 (+)
G142435 NA non-coding downstream 117899 2417954 ~ 2434347 (+)
LOC117598173 NA other upstream 1470 2295159 ~ 2297706 (+)
LOC117598174 NA other upstream 7970 2288098 ~ 2291206 (+)
LOC117598179 NA other upstream 19289 2279079 ~ 2279887 (+)
LOC117597926 NA other upstream 27590 2270050 ~ 2271586 (+)
LOC113545687 NA other upstream 116123 2069238 ~ 2183053 (+)
LOC117595676 LOC108274861 other downstream 35154 2335209 ~ 2357993 (+)
LOC117598105 NA other downstream 73168 2373223 ~ 2558727 (+)
LOC113523823 NA other downstream 131090 2431145 ~ 3032526 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other downstream 175103 2475158 ~ 2477958 (+)
LOC117598067 NA other downstream 259756 2559811 ~ 2808637 (+)

Expression


Co-expression Network