trnaa-agc_4


Basic Information

Item Value
gene id trnaa-agc_4
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7611770 ~ 7611842 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaa-agc_4
GGGGGATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTAGCGGGATCGATGCCCGCATCCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-agc_4 True 73 tRNA 0.59 1 7611770 7611842

Neighbor

gene id symbol gene type direction distance location
trnaa-agc_3 NA coding upstream 2657 7609041 ~ 7609113 (+)
atp10b atp10b coding upstream 37541 7536335 ~ 7574229 (+)
gabrb2a gabrb2,LOC107554707,LOC107684828 coding upstream 86420 7467772 ~ 7525350 (+)
ccng1 ccng1,LOC107745080 coding upstream 167504 7439695 ~ 7444266 (+)
LOC113529491 LOC108275229,LOC103023804,LOC103475354 coding upstream 177540 7422869 ~ 7434230 (+)
trnaa-agc_5 NA coding downstream 2663 7614505 ~ 7614577 (+)
trnaa-agc_6 NA coding downstream 8095 7619937 ~ 7620009 (+)
trnaa-agc_7 NA coding downstream 22656 7634498 ~ 7634570 (+)
atp7a atp7a,LOC101485317 coding downstream 34486 7646328 ~ 7672282 (+)
sowahab LOC108274591 coding downstream 62699 7674541 ~ 7678733 (+)
G144665 NA non-coding upstream 33393 7578128 ~ 7578377 (+)
G144661 NA non-coding upstream 34982 7576060 ~ 7576788 (+)
G144568 NA non-coding upstream 36279 7575108 ~ 7575491 (+)
G144523 NA non-coding upstream 190950 7418761 ~ 7420820 (+)
G144486 NA non-coding upstream 344855 7239003 ~ 7266915 (+)
G144715 NA non-coding downstream 73906 7685748 ~ 7688153 (+)
G144726 NA non-coding downstream 92239 7704081 ~ 7704763 (+)
G144782 NA non-coding downstream 403818 8015660 ~ 8018082 (+)
G144891 NA non-coding downstream 431253 8043095 ~ 8043297 (+)
G144903 NA non-coding downstream 501819 8113661 ~ 8114545 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 145218 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 655254 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 658897 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 660348 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 812866 6796972 ~ 6798904 (+)
G145233 LOC107676291 other downstream 1229634 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 2925409 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 2942524 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3683286 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 3983657 11595499 ~ 11597970 (+)

Expression


Co-expression Network