trnaa-agc_5


Basic Information

Item Value
gene id trnaa-agc_5
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 7614505 ~ 7614577 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnaa-agc_5
GGGGGATTAGCTCAAATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTAGCGGGATCGATGCCCGCATCCTCCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnaa-agc_5 True 73 tRNA 0.59 1 7614505 7614577

Neighbor

gene id symbol gene type direction distance location
trnaa-agc_4 NA coding upstream 2663 7611770 ~ 7611842 (+)
trnaa-agc_3 NA coding upstream 5392 7609041 ~ 7609113 (+)
atp10b atp10b coding upstream 40276 7536335 ~ 7574229 (+)
gabrb2a gabrb2,LOC107554707,LOC107684828 coding upstream 89155 7467772 ~ 7525350 (+)
ccng1 ccng1,LOC107745080 coding upstream 170239 7439695 ~ 7444266 (+)
trnaa-agc_6 NA coding downstream 5360 7619937 ~ 7620009 (+)
trnaa-agc_7 NA coding downstream 19921 7634498 ~ 7634570 (+)
atp7a atp7a,LOC101485317 coding downstream 31751 7646328 ~ 7672282 (+)
sowahab LOC108274591 coding downstream 59964 7674541 ~ 7678733 (+)
gdf9 gdf9 coding downstream 66009 7680586 ~ 7685537 (+)
G144665 NA non-coding upstream 36128 7578128 ~ 7578377 (+)
G144661 NA non-coding upstream 37717 7576060 ~ 7576788 (+)
G144568 NA non-coding upstream 39014 7575108 ~ 7575491 (+)
G144523 NA non-coding upstream 193685 7418761 ~ 7420820 (+)
G144486 NA non-coding upstream 347590 7239003 ~ 7266915 (+)
G144715 NA non-coding downstream 71171 7685748 ~ 7688153 (+)
G144726 NA non-coding downstream 89504 7704081 ~ 7704763 (+)
G144782 NA non-coding downstream 401083 8015660 ~ 8018082 (+)
G144891 NA non-coding downstream 428518 8043095 ~ 8043297 (+)
G144903 NA non-coding downstream 499084 8113661 ~ 8114545 (+)
gabra6a gabra6,LOC108275227,LOC107554706,LOC107684829 other upstream 147953 7447870 ~ 7466552 (+)
trnaw-cca_12 NA other upstream 657989 6956445 ~ 6956516 (+)
trnaw-cca_11 NA other upstream 661632 6952802 ~ 6952873 (+)
trnaw-cca_10 NA other upstream 663083 6951072 ~ 6951422 (+)
LOC117598156 NA other upstream 815601 6796972 ~ 6798904 (+)
G145233 LOC107676291 other downstream 1226899 8841476 ~ 8842266 (+)
si:ch73-233f7.1 si:ch73-233f7.1,LOC108274507,LOC107660897,LOC107588310,LOC107596359,LOC107754489,LOC108430952 other downstream 2922674 10537251 ~ 10547929 (+)
LOC113529865 LOC108275059,LOC107660898,LOC106604817 other downstream 2939789 10554366 ~ 10595601 (+)
hrh2a LOC108274475 other downstream 3680551 11295128 ~ 11306318 (+)
atp6v0e1 va0e1,atp6v0e1,LOC106612155 other downstream 3980922 11595499 ~ 11597970 (+)

Expression


Co-expression Network