trnac-gca_5


Basic Information

Item Value
gene id trnac-gca_5
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047603.1
NCBI id CM018549.1
chromosome length 29458963
location 3254552 ~ 3254623 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>trnac-gca_5
GGGGGTATAGCTCCGTGGTAGAGCGTTTGACTGCAAATCAAGAGGTCTCTGGTTCAAATCAAGGTGCTCCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnac-gca_5 True 72 tRNA 0.51 1 3254552 3254623

Neighbor

gene id symbol gene type direction distance location
LOC117597933 LOC108279645 coding upstream 4797 3248524 ~ 3249755 (+)
slc39a7 slc39a7,LOC107395789 coding upstream 100706 3146038 ~ 3153846 (+)
rps18 rps18,LOC107726165,LOC107693766 coding upstream 130838 3118288 ~ 3123714 (+)
LOC113523850 NA coding upstream 193215 3055623 ~ 3061337 (+)
LOC117598055 NA coding upstream 356295 2893487 ~ 2898257 (+)
cratb cratb,LOC108274804,LOC108435838,LOC107561339,LOC107563340,LOC107758403,LOC107679039,LOC105903715 coding downstream 39176 3293799 ~ 3308324 (+)
ppt2b ppt2,LOC103364422 coding downstream 91949 3346572 ~ 3356643 (+)
rps5 rps5,LOC105903695 coding downstream 107777 3362400 ~ 3368547 (+)
LOC113523857 NA coding downstream 109592 3364215 ~ 3364348 (+)
LOC113523859 NA coding downstream 111502 3366125 ~ 3366258 (+)
trnac-gca_4 NA non-coding upstream 1454 3253027 ~ 3253098 (+)
LOC113523833 LOC108279645 non-coding upstream 2553 3251385 ~ 3251999 (+)
G142524 NA non-coding upstream 24252 3229306 ~ 3230300 (+)
trnac-gca_3 NA non-coding upstream 35332 3219149 ~ 3219220 (+)
trnac-gca_2 NA non-coding upstream 37063 3217418 ~ 3217489 (+)
trnac-gca_6 NA non-coding downstream 645 3255268 ~ 3255339 (+)
trnac-gca_7 NA non-coding downstream 1887 3256510 ~ 3256581 (+)
trnac-gca_8 NA non-coding downstream 2821 3257444 ~ 3257515 (+)
trnac-gca_9 NA non-coding downstream 4567 3259190 ~ 3259261 (+)
trnac-gca_10 NA non-coding downstream 5185 3259808 ~ 3259879 (+)
LOC113523823 NA other upstream 222026 2431145 ~ 3032526 (+)
LOC117598067 NA other upstream 445915 2559811 ~ 2808637 (+)
LOC117598057 NA other upstream 561710 2687795 ~ 2692842 (+)
LOC117598105 NA other upstream 695825 2373223 ~ 2558727 (+)
LOC117598104 LOC108274858,LOC108274862,LOC108261310,LOC108274845 other upstream 776594 2475158 ~ 2477958 (+)
LOC113523845 NA other downstream 129557 3384180 ~ 3396067 (+)
G142576 NA other downstream 143047 3397670 ~ 3462171 (+)
fhl3b fhl3,LOC108438237,LOC107734040,LOC107551770,LOC107681628 other downstream 1230210 4484833 ~ 4509248 (+)
gpx3 gpx3 other downstream 2486284 5740907 ~ 5747944 (+)
LOC113547098 deptor,LOC108274614,LOC108442483,LOC107685573 other downstream 3332588 6587211 ~ 6593605 (+)

Expression


Co-expression Network