G287625 (LOC106958509,LOC105896829,LOC107690788,LOC107726395,LOC107671222,LOC107579420,LOC107719248,LOC106963510,LOC107723971)


Basic Information

Item Value
gene id G287625
gene name LOC106958509,LOC105896829,LOC107690788,LOC107726395,LOC107671222,LOC107579420,LOC107719248,LOC106963510,LOC107723971
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 806306 ~ 897362 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU340599
GTTTTATTGAGCAGCTTGACTTCGAGAGAGCAGCATCATGTCTGGCAGAGGCAAGGGCGGAAAGGGGCTCGGCAAAGGAGGCGCCAAGCGTCACCGTAAAGTTCTTCGCGATAACATCCAGGGAATCACCAAGCCGGCTATTCGCCGTCTGGCTCGCCGTGGCGGTGTTAAGCGTATTTCCGGTCTGATCTACGAAGAGACTCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAGCATGCCAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCCCTGAAACGCCAGGGACGCACCCTGTACGGCTTCGGCGGTTAAACGCTCCAACACCGAACGACGCGAACACAACGTTCTTCGCGATAACATCCAGGGAATCACCAAGCCGGCTATTCGCCGTCTGGCTCGCCGTGGCGGTGTTAAGCGTATTTCCGGTCTGATCTACGAAGAGACTCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAGCATGCCAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCCCTGAAACGCCAGGGACGCACCCTGTACGGCTTCGGCGGTTAAACGCTCCAACACCGAACAACGCGAACACAACGGCTCTTTTAAGAGCCACCCAAACATCCAGAAAAAGAGCTGTTCctcgtgctgtgtgtgtgg
>TU340601
GTTTTATTGAGCAGCTTGACTTCGAGAGAGCAGCATCATGTCTGGCAGAGGCAAGGGCGGAAAGGGGCTCGGCAAAGGAGGCGCCAAGCGTCACCGTAAAGTTCTTCGCGATAACATCCAGGGAATCACCAAGCCGGCTATTCGCCGTCTGGCTCGCCGTGGCGGTGTTAAGCGTATTTCCGGTCTGATCTACGAAGAGACTCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAGCATGCCAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCCCTGAAACGCCAGGGACGCACCCTGTACGGCTTCGGCGGTTAAACGCTCCAACACCGAACGACGCGAACACAACGTTCTTCGCGATAACATCCAGGGAATCACCAAGCCGGCTATTCGCCGTCTGGCTCGCCGTGGCGGTGTTAAGCGTATTTCCGGTCTGATCTACGAAGAGACTCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAGCATGCCAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCCCTGAAACGCCAGGGACGCACCCTGTACGGCTTCGGCGGTTAAACGCTCCAACACCGAACGACGCGAACACAACGGCTCTTTTAAGAGCCACCCAAACATCCAGAAAAAGAGCTGTTCctcgtgctgtgtgtgtgtgtgtgtgtgtgtgtgttttttttacacacgtAACACATAAGTAGAAGATAATTTATATATGAACACAAAATCATAA
>TU340603
GTTTTATTGAGCAGCTTGACTTCGAGAGAGCAGCATCATGTCTGGCAGAGGCAAGGGCGGAAAGGGGCTCGGCAAAGGAGGCGCCAAGCGTCACCGTAAAGTTCTTCGCGATAACATCCAGGGAATCACCAAGCCGGCTATTCGCCGTCTGGCTCGCCGTGGCGGTGTTAAGCGTATTTCCGGTCTGATCTACGAAGAGACTCGCGGTGTTAAGCGTATTTCCGGTCTGATCTACGAAGAGACTCGCGGTGTGCTGAAGGTGTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCGAGCATGCCAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCCCTGAAACGCCAGGGACGCACCCTGTACGGCTTCGGCGGTTAAACGCTCCAACACCGAACGACGCCGTCACCTACACCGAGCATGCCAAGAGGAAGACGGTCACCGCCATGGATGTGGTGTACGCCCTGAAACGCCAGGGACGCACCCTGTACGGCTTCGGCGGTTAAACGCTCCAACACCGAACGACGCGAACACAACGGCTCTTTTAAGAGCCACCCAAACATCCAGAAAAAGAGCTGTTCctcgtgctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttttttttacacacgtAACACATAAGTAGAAGATAATTTATATATGAACACAAAATCATAAACAATCTagttttac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU340599 False 722 TUCP 0.58 3 806306 897362
TU340601 True 798 TUCP 0.55 3 806306 819547
TU340603 False 726 TUCP 0.53 3 806306 831980

Neighbor

gene id symbol gene type direction distance location
LOC117599791 LOC108280478,LOC108412378 coding upstream 288862 511056 ~ 517444 (+)
LOC117599754 NA coding upstream 400360 405152 ~ 405946 (+)
LOC117599788 LOC107739129,LOC107589765 coding upstream 596122 203020 ~ 210184 (+)
LOC113523954 LOC107573535,LOC107574960,LOC107710299,LOC107571679 coding upstream 672042 120176 ~ 134264 (+)
LOC117599786 LOC107725728 coding upstream 704327 85203 ~ 101979 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding downstream 117522 1014884 ~ 1036096 (+)
LOC117599792 NA coding downstream 306151 1203513 ~ 1208039 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding downstream 396420 1293782 ~ 1332827 (+)
LOC117599793 LOC108257824 coding downstream 443146 1340508 ~ 1344631 (+)
olfml2ba LOC108257824 coding downstream 466722 1364084 ~ 1379201 (+)
G287627 NA non-coding upstream 3782 762431 ~ 802524 (+)
LOC113525268 NA non-coding upstream 337902 454598 ~ 468404 (+)
LOC117599767 NA non-coding upstream 415104 388695 ~ 391202 (+)
LOC117599768 NA non-coding upstream 650711 155007 ~ 155595 (+)
LOC117599770 NA non-coding upstream 651743 154129 ~ 154563 (+)
LOC117599769 NA non-coding downstream 28871 926233 ~ 926639 (+)
G287814 NA non-coding downstream 92848 990210 ~ 990435 (+)
G287817 NA non-coding downstream 108305 1005667 ~ 1007006 (+)
G287872 NA non-coding downstream 286721 1184083 ~ 1184363 (+)
G287891 NA non-coding downstream 344499 1241861 ~ 1242067 (+)
G287892 NA other downstream 345695 1243057 ~ 1243672 (+)
LOC117599677 NA other downstream 361814 1259176 ~ 1264632 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 460824 1358186 ~ 1360116 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 1098758 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 1235796 2133158 ~ 2142181 (+)

Expression


Co-expression Network