LOC117599757 (LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589)


Basic Information

Item Value
gene id LOC117599757
gene name LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 807193 ~ 898410 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU340640
AATTACAATGTCGGCCTGTAAATAGAGCGGCCGCGAGGCGGGCGTTATTCATTCTCTCGCAGTCTACaggagaagcagcagcagcaacatgcCCGACCCAGCCAAGGCCGCTCCCAAGAAGGGATCCAAGAAAGCCGTGACCAAGACGGCCGGCAAAGGAGGCAAGAAGCGCAGAAAGTCCAGGAAGGAGAGCTACGCTATCTACGTGTACAAAGTCCTGAAGCAGGTGCACCCCGACACCGGCATCTCTTCTAAGGCGATGGGTATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGGTGAGTCCTCTCGTCTGGCTCATTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGCCTGTTGCTTCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTAAAGCGCCTTACCGCCGTCACCAAGTACACCAGCTCCAAGTAAAGCGCCTTACCGCCGTCTTCATCAACCCAACGGCTCTTTTAAGAGCCACCCACTCCTTCATATAAAGAGcaatttcttcttttcctccctgtctctctctctctctctctgtgtgtgtggcggGGGGAGGGAGCGCGTTCCCCGCCGGCTTTTATCGCGCTGTTTCCCCGCGACTGTTT
>TU340641
AATTACAATGTCGGCCTGTAAATAGAGCGGCCGCGAGGCGGGCGTTATTCATTCTCTCGCAGTCTACaggagaagcagcagcagcaacatgcCCGACCCAGCCAAGGCCGCTCCCAAGAAGGGATCCAAGAAAGCCGTGACCAAGACGGCCGGCAAAGGAGGCAAGAAGCGCAGAAAGTCCAGGAAGGAGAGCTACGCTATCTACGTGTACAAAGTCCTGAAGCAGGTGCACCCCGACACCGGCATCTCTTCTAAGGCGATGGGTATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGGTGAGTCCTCTCGTCTGGCTCATTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGCCTGTTGCTTCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTAAAGCGCCTTACCGCCGTCACCAAGTACACCAGCTCCAAGTAAAGCGCCTTACCGCCGTCTTCATCAACCCAACGGCTCTTTTAAGAGCCACCCACTCCTTCATATAAAGAGcaatttcttcttttcctccctgtctctctctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacggggGGGGGGGGGGCGCGTTCCCCGCCGGCTTTTATCGCGCTGTTCCCCCGCGACTGTTTTGTTCATTGTGTGAGTCTTGTAGTATGCTAAATGCGCAGGTGAGTAATTATAAACAATATTGTACGAGCATCATGCGTTCTCAATGTTGTTAAATAGTGGAATGGCAGCATGAAGTAGTTCTATCAATCAATGTTATAGCACTGCAAAGGAATTCAAAATGGGCTTCTAGaggcacagagtacttcaaaatagtgTTCTAGCTGGACTAAGTAATTCAATTTAATGTTATAGCACCACAAAGTAATTTGAAATAGGCTCATAGAGGCAAAAAGTAATTGAAAGTAGGATTATAGCTGCGCAGAGTAATTCAAAATAGTGTCATAACAGCAATTAATAATTCAGTGTAATGTTATAATTTCACAAAGTAATTCAAAATAGgattatagcagcacagagtacttctAAAAAGGGTTATAGCAGCAGGAAATAATTGAGATTAGGTTTATAGC
>XM_034313775.1
GAGGCGGGCGTTATTCATTCTCTCGCAGTCTACaggagaagcagcagcagcaacatgcCCGACCCAGCCAAGGCCGCTCCCAAGAAGGGATCCAAGAAAGCCGTGACCAAGACGGCCGGCAAAGGAGGCAAGAAGCGCAGAAAGTCCAGGAAGGAGAGCTACGCTATCTACGTGTACAAAGTCCTGAAGCAGGTGCACCCCGACACCGGCATCTCTTCTAAGGCGATGGGTATCATGAACTCGTTCGTGAACGACATCTTCGAGCGTATCGCCGGTGAGTCCTCTCGTCTGGCTCATTACAACAAGCGCTCCACCATCACCTCCAGGGAGATCCAGACCGCCGTGCGCCTGTTGCTTCCCGGCGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCAAGGCCGTCACCAAGTACACCAGCTCCAAGTAAAGCGCCTTACCGCCGTCTTCATCAACCCAACGGCTCTTTTAAGAGCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU340640 False 683 TUCP 0.57 3 807193 898410
TU340641 True 1167 TUCP 0.48 2 807193 821061
XM_034313775.1 False 478 mRNA 0.58 1 807227 807704

Neighbor

gene id symbol gene type direction distance location
LOC117599762 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107671222 coding upstream 463 806321 ~ 806730 (+)
LOC117599791 LOC108280478,LOC108412378 coding upstream 289749 511056 ~ 517444 (+)
LOC117599754 NA coding upstream 401247 405152 ~ 405946 (+)
LOC117599788 LOC107739129,LOC107589765 coding upstream 597009 203020 ~ 210184 (+)
LOC113523954 LOC107573535,LOC107574960,LOC107710299,LOC107571679 coding upstream 672929 120176 ~ 134264 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding downstream 116474 1014884 ~ 1036096 (+)
LOC117599792 NA coding downstream 305103 1203513 ~ 1208039 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding downstream 395372 1293782 ~ 1332827 (+)
LOC117599793 LOC108257824 coding downstream 442098 1340508 ~ 1344631 (+)
olfml2ba LOC108257824 coding downstream 465674 1364084 ~ 1379201 (+)
G287627 NA non-coding upstream 4669 762431 ~ 802524 (+)
LOC113525268 NA non-coding upstream 338789 454598 ~ 468404 (+)
LOC117599767 NA non-coding upstream 415991 388695 ~ 391202 (+)
LOC117599768 NA non-coding upstream 651598 155007 ~ 155595 (+)
LOC117599770 NA non-coding upstream 652630 154129 ~ 154563 (+)
LOC117599769 NA non-coding downstream 27823 926233 ~ 926639 (+)
G287814 NA non-coding downstream 91800 990210 ~ 990435 (+)
G287817 NA non-coding downstream 107257 1005667 ~ 1007006 (+)
G287872 NA non-coding downstream 285673 1184083 ~ 1184363 (+)
G287891 NA non-coding downstream 343451 1241861 ~ 1242067 (+)
G287892 NA other downstream 344647 1243057 ~ 1243672 (+)
LOC117599677 NA other downstream 360766 1259176 ~ 1264632 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 459776 1358186 ~ 1360116 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 1097710 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 1234748 2133158 ~ 2142181 (+)

Expression


Co-expression Network