G287872


Basic Information

Item Value
gene id G287872
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1184083 ~ 1184363 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU340963
GGGCTTGATAAGCCCCAGAGGAGGGATGtatggaggaatttcctgttatctctatcaaaatcatttgttaatcagtattatgtcaaacagtatctatgcaacagtattgaaaagtgaccttaaatcacctcatgtattaactttcagagcttcatttatatactacactgtaccatttctagtaCATTTAGAAGGGTGACTTTATGCCTATGATCCTACAaggatgtttctgtgagaacaaactggtgtgaccttgtaggtggtgtttttaaggtgaaggc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU340963 True 281 lncRNA 0.37 1 1184083 1184363

Neighbor

gene id symbol gene type direction distance location
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding upstream 147987 1014884 ~ 1036096 (+)
LOC117599763 NA coding upstream 286797 897000 ~ 897286 (+)
LOC113525267 NA coding upstream 322593 859667 ~ 861490 (+)
LOC117599758 LOC107715185,LOC107745493,LOC107581013,LOC108417841,LOC107756941,LOC107569589,LOC107738483,LOC107690133,LOC105910449 coding upstream 351258 832360 ~ 832825 (+)
LOC117599761 LOC106958509,LOC105896829,LOC106963510,LOC107690788,LOC107671222 coding upstream 352237 831420 ~ 831846 (+)
LOC117599792 NA coding downstream 19150 1203513 ~ 1208039 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding downstream 109419 1293782 ~ 1332827 (+)
LOC117599793 LOC108257824 coding downstream 156145 1340508 ~ 1344631 (+)
olfml2ba LOC108257824 coding downstream 179721 1364084 ~ 1379201 (+)
rxrgb LOC108257822,LOC108230807,LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC102214418,LOC101470618,LOC103365718 coding downstream 287819 1472182 ~ 1519008 (+)
G287817 NA non-coding upstream 177077 1005667 ~ 1007006 (+)
G287814 NA non-coding upstream 193648 990210 ~ 990435 (+)
LOC117599769 NA non-coding upstream 257444 926233 ~ 926639 (+)
G287630 NA non-coding upstream 290579 801623 ~ 893504 (+)
G287627 NA non-coding upstream 381559 762431 ~ 802524 (+)
G287891 NA non-coding downstream 57498 1241861 ~ 1242067 (+)
G287962 NA non-coding downstream 250192 1434555 ~ 1435138 (+)
G288036 NA non-coding downstream 269212 1453575 ~ 1453870 (+)
G288038 NA non-coding downstream 270607 1454970 ~ 1455834 (+)
G288039 NA non-coding downstream 271545 1455908 ~ 1456374 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 285673 807193 ~ 898410 (+)
G287625 LOC106958509,LOC105896829,LOC107690788,LOC107726395,LOC107671222,LOC107579420,LOC107719248,LOC106963510,LOC107723971 other upstream 286721 806306 ~ 897362 (+)
G287892 NA other downstream 58694 1243057 ~ 1243672 (+)
LOC117599677 NA other downstream 74813 1259176 ~ 1264632 (+)
srp9 srp9,LOC107553440,LOC107601484 other downstream 173823 1358186 ~ 1360116 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 811757 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 948795 2133158 ~ 2142181 (+)

Expression


Co-expression Network