srp9 (srp9,LOC107553440,LOC107601484)


Basic Information

Item Value
gene id srp9
gene name srp9,LOC107553440,LOC107601484
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1358186 ~ 1360116 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341023
ATAACGGACCAACCAGGATGATTCTTTTTGATTATTGCGGCCATGTTTTCCTTCGCCGACTTCGCTGATGTGTTATAAACCTGTAGCTTGTCTACCTAGCAAGAGACGAGTAGTTGTAATTCATAATTTTCACGTTTAGTTCACGTTTTGTTGAATCATGCCTTATTATCAGACCTGGGAAGAGTTTGCTCGAGCGGCAGAAAAGCTCTATCTGACGGACCCGATGAAGGTCCGAGTTGTGCTGAAATATCGCCACTGCGACGGGAACCTCTGTATGAAAGTCACAGATAACGCTGTGTGTCTGCAGTACAAGACCGATCAGGCACAGGACGTGAAGAAGATCGAGAAGCTGCACGGAAAGCTGATGAGGCTGATGGTGTCCAAGGAGTCCCACAGTGGAGCGATGGAGACGGACTGAAGGACAGTGAATGGACTGTTGGACAGTGGAGCTGCGCCTGCTCCACTCACACTCATTTGAAGAGCATGGACATGACAAGTCTATGTTTGGAGCGCTGAGAAGTTTGGTAGACAGAAGTGAAAATTATGTCCCCAATCGCCCAGGAATCTCCCCACGAAGAGCTGATATTTATTCTCAGATTCAGGATGGACTTTATTTTGTGATTAACCAGTGTTCTGTACATAACGtgctagtatttttttttaagcccaACATTAGAGCCAGTGGTTAAATGCACATGAAAGCCATGTCTTGTCTGAGCCCAAAGTCTGTTCTGTAATGAATACCGTGAGCTAAAACAAtttgttattcttttgtttggg
>XM_026928286.2
GGATGATTCTTTTTGATTATTGCGGCCATGTTTTCCTTCGCCGACTTCGCTGATGTGTTATAAACCTGTAGCTTGTCTACCTAGCAAGAGACGAGTAGTTGTAATTCATAATTTTCACGTTTAGTTCACGTTTTGTTGAATCATGCCTTATTATCAGACCTGGGAAGAGTTTGCTCGAGCGGCAGAAAAGCTCTATCTGACGGACCCGATGAAGGTCCGAGTTGTGCTGAAATATCGCCACTGCGACGGGAACCTCTGTATGAAAGTCACAGATAACGCTGTGTGTCTGCAGTACAAGACCGATCAGGCACAGGACGTGAAGAAGATCGAGAAGCTGCACGGAAAGCTGATGAGGCTGATGGTGTCCAAGGAGTCCCACAGTGGAGCGATGGAGACGGACTGAAGGACAGTGAATGGACTGTTGGACAGTGGAGCTGCGCCTGCTCCACTCACACTCATTTGAAGAGCATGGACATGACAAGTCTATGTTTGGAGCGCTGAGAAGTTTGGTAGACAGAAGTGAAAATTATGTCCCCAATCGCCCAGGAATCTCCCCACGAAGAGCTGATATTTATTCTCAGATTCAGGATGGACTTTATTTTGTGATTAACCAGTGTTCTGTACATAACGtgctagtatttttttttaagcccaACATTAGAGCCAGTGGTTAAATGCACATGAAAGCCATGTCTTGTCTGAGCCCAAAGTCTGTTCTGTAATGAATACCGTGAGCTAAAACAAtttgttattcttttgtttgggaatctttttttttcaagcatcttAAGATTATCTTCTTTAGAAGTGATATCTTTGTTTATGGTGCAACTGTTTTTCATATGTATTTTTAAGTTTAGcataaaacttaaataaaaaaaataggtcTGAACAATGAGTTGTAAGATAGATTAACTGTGACACACTGATATGATGAAAGTTGAAAGGCAAAAACACTAATTATAATCTAAGAAATGTTGCGGCTTTTAATGGAAATATACATTTGAAAGATTTCAACGTACGCTACCAATTGAAAGTTTAAAAACACTTCATATAAGCAAACACCTAAGCAAACATACAGATTTCAACATACACTACAAATCCAAAATTTGAAAACACCTCGTAACGGGCTTTTCCTCATTTGTCTTTTTCTACTGTTTTAGAATACTAATGAAGATATTAACACTATGAATTTCATATGGAATTATGCAGTGACCAAGAAAattgttaaacaaatcaaaactattttatatgttaaattcttaacagtattcctgatgaagATTTTCAAGATCTCAGTCAGTTTCATGagagacatttttttccaaacagaCTGATCACTCCCTGGCTGTTTCTCCTAAGTTGTAAATGAAAACCACTTTTTGTggaaaacaaatttattttaagcaaaagctacttataaaatatttcaaccATAAACATGTATAAGTAGAGAGAAGAAACAATGACAatgttttgatcatttttgatataaatgtgtacagtataatgtgaTGAA

Function

symbol description
srp9 Predicted to enable 7S RNA binding activity. Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane. Predicted to act upstream of or within negative regulation of translational elongation. Predicted to be located in cytoplasm. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Orthologous to human SRP9 (signal recognition particle 9).

NR:

description
signal recognition particle 9 kDa protein

GO:

id name namespace
GO:0006614 SRP-dependent cotranslational protein targeting to membrane biological_process
GO:0045900 negative regulation of translational elongation biological_process
GO:0005786 signal recognition particle, endoplasmic reticulum targeting cellular_component
GO:0008312 7S RNA binding molecular_function

KEGG:

id description
K03109 SRP9; signal recognition particle subunit SRP9

RNA

RNA id representative length rna type GC content exon number start site end site
TU341023 False 780 TUCP 0.45 3 1358186 1359362
XM_026928286.2 True 1519 mRNA 0.37 3 1358201 1360116

Neighbor

gene id symbol gene type direction distance location
LOC117599793 LOC108257824 coding upstream 13555 1340508 ~ 1344631 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding upstream 25359 1293782 ~ 1332827 (+)
LOC117599792 NA coding upstream 150147 1203513 ~ 1208039 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding upstream 322090 1014884 ~ 1036096 (+)
LOC117599763 NA coding upstream 460900 897000 ~ 897286 (+)
olfml2ba LOC108257824 coding downstream 3968 1364084 ~ 1379201 (+)
rxrgb LOC108257822,LOC108230807,LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC102214418,LOC101470618,LOC103365718 coding downstream 112066 1472182 ~ 1519008 (+)
LOC113546822 NA coding downstream 116036 1476152 ~ 1478084 (+)
lmx1a LOC108257702 coding downstream 161823 1521939 ~ 1534003 (+)
si:dkey-51e6.1 LOC108257519,LOC108442414,LOC103037051,LOC107555634,LOC107726439 coding downstream 232448 1592564 ~ 1595352 (+)
G287891 NA non-coding upstream 116119 1241861 ~ 1242067 (+)
G287872 NA non-coding upstream 173823 1184083 ~ 1184363 (+)
G287817 NA non-coding upstream 351180 1005667 ~ 1007006 (+)
G287814 NA non-coding upstream 367751 990210 ~ 990435 (+)
LOC117599769 NA non-coding upstream 431547 926233 ~ 926639 (+)
G287962 NA non-coding downstream 74439 1434555 ~ 1435138 (+)
G288036 NA non-coding downstream 93459 1453575 ~ 1453870 (+)
G288038 NA non-coding downstream 94854 1454970 ~ 1455834 (+)
G288039 NA non-coding downstream 95792 1455908 ~ 1456374 (+)
G288047 NA non-coding downstream 112597 1472713 ~ 1473097 (+)
LOC117599677 NA other upstream 93554 1259176 ~ 1264632 (+)
G287892 NA other upstream 114514 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 459776 807193 ~ 898410 (+)
G287625 LOC106958509,LOC105896829,LOC107690788,LOC107726395,LOC107671222,LOC107579420,LOC107719248,LOC106963510,LOC107723971 other upstream 460824 806306 ~ 897362 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 636004 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 773042 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 1124920 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 2583378 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 2627936 3988052 ~ 3988123 (+)

Expression


Co-expression Network