G288039


Basic Information

Item Value
gene id G288039
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1455908 ~ 1456374 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341156
CTTTCACTATCTATTTTACGCAATTGTCTGGCTAGTAGTTTATGGGGCTTCTCTCCGAATTCAAAGTATTTctgtttaatgaaatgaaaagttctATTAATTTTAGTAGAGACTATATTATTGTATTCGTACCTTAACTGTAAAATTTTCTTATAAGTATCTAACGAGGGGTTTAGTGCATTTTCAATGTCTAGCTGATGAATTTGTTTCCCTAAATCAGTTAATTTggatttgtataatttattccGGGACCCTTGATATGATATAACACAACCTCTGATAAATGCTTTTAACGTTTCCCAGAGCAGTCCTGATGATATCTCTGGCTTATCGTTGCTATCGAAAAAAATTTCCAATTGCGAACTCATGAAATCAATGAACTTAGGGTCATCAACTAGTTGAGGGTCCATCCTCCATAAGGGTCGGATAAACGATGTTTGATCGAAAACAACTTCAAATGAAACTGG
>TU341157
TATGGGGCTTCTCTCCGAATTCAAAGTATTTctgtttaatgaaatgaaaagttctATTAATTTTAGTAGAGACTATATTATTGTATTCGTACCTTAACTGTAAAATTTTCTTATAAGTATCTAACGAGGGGTTTAGTGCATTTTCAATGTCTAGCTGATGAATTTGTTTCCCTAAATCAGTTAATTTggatttgtataatttattccGGGACCCTTGATATGATATAACACAACCTCTGATAAATGCTTTTAACGTTTCCCAGAGCAGTCCTGATGATATCTCTGGCTTATCGTTGCTATCGAAAAAAATTTCCAATTGCGAACTCATGAAATCAATGAACTTAGGGTCATCAACTAGTTGAGGGTCCATCCTCCATAAGGGTCGGATAAACGATGTTTGATCGAAAACAACTTCAAATGAAACTGG

Function

GO: NA

KEGG:

id description
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU341156 True 467 lncRNA 0.34 1 1455908 1456374
TU341157 False 427 lncRNA 0.34 1 1455948 1456374

Neighbor

gene id symbol gene type direction distance location
olfml2ba LOC108257824 coding upstream 76707 1364084 ~ 1379201 (+)
LOC117599793 LOC108257824 coding upstream 111277 1340508 ~ 1344631 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding upstream 123081 1293782 ~ 1332827 (+)
LOC117599792 NA coding upstream 247869 1203513 ~ 1208039 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding upstream 419812 1014884 ~ 1036096 (+)
rxrgb LOC108257822,LOC108230807,LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC102214418,LOC101470618,LOC103365718 coding downstream 15808 1472182 ~ 1519008 (+)
LOC113546822 NA coding downstream 19778 1476152 ~ 1478084 (+)
lmx1a LOC108257702 coding downstream 65565 1521939 ~ 1534003 (+)
si:dkey-51e6.1 LOC108257519,LOC108442414,LOC103037051,LOC107555634,LOC107726439 coding downstream 136190 1592564 ~ 1595352 (+)
c19h1orf112 c25h1orf112 coding downstream 145076 1601450 ~ 1623462 (+)
G288038 NA non-coding upstream 74 1454970 ~ 1455834 (+)
G288036 NA non-coding upstream 2038 1453575 ~ 1453870 (+)
G287962 NA non-coding upstream 20770 1434555 ~ 1435138 (+)
G287891 NA non-coding upstream 213841 1241861 ~ 1242067 (+)
G287872 NA non-coding upstream 271545 1184083 ~ 1184363 (+)
G288047 NA non-coding downstream 16339 1472713 ~ 1473097 (+)
G288048 NA non-coding downstream 17556 1473930 ~ 1475449 (+)
LOC117599747 NA non-coding downstream 109822 1566196 ~ 1567317 (+)
G288134 NA non-coding downstream 142017 1598391 ~ 1598593 (+)
G288171 LOC108257608 non-coding downstream 239534 1695908 ~ 1698167 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 95792 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 191276 1259176 ~ 1264632 (+)
G287892 NA other upstream 212236 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 557498 807193 ~ 898410 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 539746 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 676784 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 1028662 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 2487120 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 2531678 3988052 ~ 3988123 (+)

Expression


Co-expression Network