G288047


Basic Information

Item Value
gene id G288047
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1472713 ~ 1473097 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341167
gagagagagagagagagaaagagaaagagagagagagacggacagacacagactgagagatagacacatagagagagagagatagacagacagccagacagacacagagagagagagagagagagagatagaaagagagagagagagagagacggacagacacagactgagagatagacacatagagagagagagagatagacagacagccagagagacagagagagagagagagatagaaagagaaagagagagatagacagacagacacaggctGAGAGAtagac

Function

GO:

id name namespace
GO:0030163 protein catabolic process biological_process
GO:0044257 cellular protein catabolic process biological_process
GO:0044265 cellular macromolecule catabolic process biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process

KEGG:

id description
ko04064 NF-kappa B signaling pathway
ko04668 TNF signaling pathway
ko04660 T cell receptor signaling pathway
ko05170 Human immunodeficiency virus 1 infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU341167 True 287 lncRNA 0.47 2 1472713 1473097

Neighbor

gene id symbol gene type direction distance location
olfml2ba LOC108257824 coding upstream 93512 1364084 ~ 1379201 (+)
LOC117599793 LOC108257824 coding upstream 128082 1340508 ~ 1344631 (+)
fam102bb fam102b,fam102bb,LOC107555630,LOC107698400,LOC107696175,LOC107601256 coding upstream 139886 1293782 ~ 1332827 (+)
LOC117599792 NA coding upstream 264674 1203513 ~ 1208039 (+)
slc5a6a slc5a6,slc5a6a,LOC107601523,LOC107690043,LOC107553475 coding upstream 436617 1014884 ~ 1036096 (+)
LOC113546822 NA coding downstream 3055 1476152 ~ 1478084 (+)
lmx1a LOC108257702 coding downstream 48842 1521939 ~ 1534003 (+)
si:dkey-51e6.1 LOC108257519,LOC108442414,LOC103037051,LOC107555634,LOC107726439 coding downstream 119467 1592564 ~ 1595352 (+)
c19h1orf112 c25h1orf112 coding downstream 128353 1601450 ~ 1623462 (+)
prg4b LOC108257844 coding downstream 165167 1638264 ~ 1648550 (+)
G288039 NA non-coding upstream 16339 1455908 ~ 1456374 (+)
G288038 NA non-coding upstream 16879 1454970 ~ 1455834 (+)
G288036 NA non-coding upstream 18843 1453575 ~ 1453870 (+)
G287962 NA non-coding upstream 37575 1434555 ~ 1435138 (+)
G287891 NA non-coding upstream 230646 1241861 ~ 1242067 (+)
G288048 NA non-coding downstream 833 1473930 ~ 1475449 (+)
LOC117599747 NA non-coding downstream 93099 1566196 ~ 1567317 (+)
G288134 NA non-coding downstream 125294 1598391 ~ 1598593 (+)
G288171 LOC108257608 non-coding downstream 222811 1695908 ~ 1698167 (+)
G288192 NA non-coding downstream 461480 1934577 ~ 1934783 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 112597 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 208081 1259176 ~ 1264632 (+)
G287892 NA other upstream 229041 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 574303 807193 ~ 898410 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 523023 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 660061 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 1011939 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 2470397 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 2514955 3988052 ~ 3988123 (+)

Expression


Co-expression Network