G288134


Basic Information

Item Value
gene id G288134
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1598391 ~ 1598593 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341277
gcagaacaacacataaaatcacgcagatgcaggtcaagagcttcagttaatgttcacatcaacagaatgtggggaaaatgtgatttcacTGACTGTGACTGTGGCATTGTTACTGGTGCCAGATGGTCTGGatttattatttcagaaacgtctgatctcctgggattctGATGCTACAttgagcacaggctcactgaaactgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU341277 True 203 lncRNA 0.43 1 1598391 1598593

Neighbor

gene id symbol gene type direction distance location
si:dkey-51e6.1 LOC108257519,LOC108442414,LOC103037051,LOC107555634,LOC107726439 coding upstream 3039 1592564 ~ 1595352 (+)
lmx1a LOC108257702 coding upstream 64388 1521939 ~ 1534003 (+)
rxrgb LOC108257822,LOC108230807,LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC102214418,LOC101470618,LOC103365718 coding upstream 79383 1472182 ~ 1519008 (+)
LOC113546822 NA coding upstream 120307 1476152 ~ 1478084 (+)
olfml2ba LOC108257824 coding upstream 219190 1364084 ~ 1379201 (+)
c19h1orf112 c25h1orf112 coding downstream 2857 1601450 ~ 1623462 (+)
prg4b LOC108257844 coding downstream 39671 1638264 ~ 1648550 (+)
pla2g4ab pla2g4a,LOC108257972,LOC108442417,LOC106560559,LOC106583972 coding downstream 131933 1730526 ~ 1758301 (+)
ak9 ak9 coding downstream 163341 1761934 ~ 1781277 (+)
ppil6 ppil6 coding downstream 187894 1786487 ~ 1800918 (+)
LOC117599747 NA non-coding upstream 31074 1566196 ~ 1567317 (+)
G288048 NA non-coding upstream 122942 1473930 ~ 1475449 (+)
G288047 NA non-coding upstream 125294 1472713 ~ 1473097 (+)
G288039 NA non-coding upstream 142017 1455908 ~ 1456374 (+)
G288038 NA non-coding upstream 142557 1454970 ~ 1455834 (+)
G288171 LOC108257608 non-coding downstream 97315 1695908 ~ 1698167 (+)
G288192 NA non-coding downstream 335984 1934577 ~ 1934783 (+)
G288207 NA non-coding downstream 396867 1995460 ~ 1995679 (+)
G288225 NA non-coding downstream 428276 2026869 ~ 2073881 (+)
G288242 NA non-coding downstream 472441 2071034 ~ 2071276 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 238275 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 333759 1259176 ~ 1264632 (+)
G287892 NA other upstream 354719 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 699981 807193 ~ 898410 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 397527 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 534565 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 886443 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 2344901 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 2389459 3988052 ~ 3988123 (+)

Expression


Co-expression Network