G288171 (LOC108257608)


Basic Information

Item Value
gene id G288171
gene name LOC108257608
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1695908 ~ 1698167 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341325
CGTGATGACATGCCTGAAGAAAGGCGTCCAGACAAGCACAGGGATTTTTAGGCTACACGCTCTCACGCAGGCGGCCCTGTGGCAGGAAACACTGCAAGACTCTGTTAAGGTGTGACACATACACAGAGctcactggattaaaaaaatctttcagaCCTTCAGGTCTTTGGAGGATGTGTGCACACCTGCCCAGCccagagagaaaacagacaaaTTGAGACTATTAAGCATGATCCCTTCCCTTCTTCCACATTCTCGCTCACTCTACATCTGCCTCATCGCCACATGGCCAGAATTCTTTTTCTGGCAGCAGTCCATATTCAGTGAGGAAGGCCTCCACGTCTGTGGCAAAGAACTCATCATTGAAGTGCTGTGTGATAGCTAAGAAGTTTCCCAGCATCTCTCCAGCCTTGTAAACAAGCACAGCTGGTAGAACGCTGTCAGAGAAGTGTTCGCCTGCACCAGAGACAGCTGTGTTGATGCGGCAGAACTTGACGCTGGGATACTCAGCAGCTAGGCAGTCCAGGCACCTGTCCAGCACCTCACAGCCCTTGACACCGGGTTTATAGACATGCACCACCACTACAGTGAATTGGTGCTCCTTCTCAATTACCTCAAGAAATTCCTCACCGCTGTCTAGTTCGTGCACTCCACTGAACCTGGGTCCAAAGCTGAGGCGCTCATGCATCTCCTGCATGCATTGCTTGCGGTACTTGCGTAGACACTGCTCATCATCCTCCTTAAGCAGCTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU341325 True 752 lncRNA 0.51 2 1695908 1698167

Neighbor

gene id symbol gene type direction distance location
prg4b LOC108257844 coding upstream 47358 1638264 ~ 1648550 (+)
c19h1orf112 c25h1orf112 coding upstream 72446 1601450 ~ 1623462 (+)
si:dkey-51e6.1 LOC108257519,LOC108442414,LOC103037051,LOC107555634,LOC107726439 coding upstream 100556 1592564 ~ 1595352 (+)
lmx1a LOC108257702 coding upstream 161905 1521939 ~ 1534003 (+)
rxrgb LOC108257822,LOC108230807,LOC103038456,LOC108443222,LOC107393220,LOC107098566,LOC102214418,LOC101470618,LOC103365718 coding upstream 176900 1472182 ~ 1519008 (+)
pla2g4ab pla2g4a,LOC108257972,LOC108442417,LOC106560559,LOC106583972 coding downstream 32359 1730526 ~ 1758301 (+)
ak9 ak9 coding downstream 63767 1761934 ~ 1781277 (+)
ppil6 ppil6 coding downstream 88320 1786487 ~ 1800918 (+)
enah enah coding downstream 126818 1824985 ~ 1889193 (+)
lbr lbr coding downstream 194602 1892769 ~ 1901993 (+)
G288134 NA non-coding upstream 97315 1598391 ~ 1598593 (+)
LOC117599747 NA non-coding upstream 128591 1566196 ~ 1567317 (+)
G288048 NA non-coding upstream 220459 1473930 ~ 1475449 (+)
G288047 NA non-coding upstream 222811 1472713 ~ 1473097 (+)
G288039 NA non-coding upstream 239534 1455908 ~ 1456374 (+)
G288192 NA non-coding downstream 236410 1934577 ~ 1934783 (+)
G288207 NA non-coding downstream 297293 1995460 ~ 1995679 (+)
G288225 NA non-coding downstream 328702 2026869 ~ 2073881 (+)
G288242 NA non-coding downstream 372867 2071034 ~ 2071276 (+)
LOC117599781 NA non-coding downstream 449048 2147215 ~ 2151238 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 335792 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 431276 1259176 ~ 1264632 (+)
G287892 NA other upstream 452236 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 797498 807193 ~ 898410 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 297953 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 434991 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 786869 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 2245327 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 2289885 3988052 ~ 3988123 (+)

Expression


Co-expression Network