G288207


Basic Information

Item Value
gene id G288207
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1995460 ~ 1995679 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341372
CGACAATTTTACAACCTTAATAGCCAAAGCATATGTCACTGTTCCTACCTCAAGCTTTCTGGGTCAACTTCCTGTTGATGCTGATGGAAATAAGATGTTATTTCTGTCAAACAGTTACACACTCCCTGGGCTTAGGAACATATCTGACCTATGTTTGCTTGTGGTAATTCTCTATGTACCTGTCCAGTTTACCTTCATGGCCCAAAGCTGCAAACTCAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU341372 True 220 lncRNA 0.41 1 1995460 1995679

Neighbor

gene id symbol gene type direction distance location
si:dkey-1j5.4 LOC108257701 coding upstream 79600 1912614 ~ 1915860 (+)
lbr lbr coding upstream 93467 1892769 ~ 1901993 (+)
enah enah coding upstream 106267 1824985 ~ 1889193 (+)
ppil6 ppil6 coding upstream 194542 1786487 ~ 1800918 (+)
ak9 ak9 coding upstream 214183 1761934 ~ 1781277 (+)
tnfrsf21 tnfrsf21 coding downstream 96796 2092475 ~ 2119917 (+)
LOC117599673 NA coding downstream 126882 2122561 ~ 2131271 (+)
adgrf3b adgrf1 coding downstream 155555 2151234 ~ 2158694 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding downstream 166752 2162431 ~ 2181156 (+)
tdrd6 NA coding downstream 194080 2189759 ~ 2212201 (+)
G288192 NA non-coding upstream 60677 1934577 ~ 1934783 (+)
G288171 LOC108257608 non-coding upstream 297293 1695908 ~ 1698167 (+)
G288134 NA non-coding upstream 396867 1598391 ~ 1598593 (+)
LOC117599747 NA non-coding upstream 428143 1566196 ~ 1567317 (+)
G288048 NA non-coding upstream 520011 1473930 ~ 1475449 (+)
G288225 NA non-coding downstream 31190 2026869 ~ 2073881 (+)
G288242 NA non-coding downstream 75355 2071034 ~ 2071276 (+)
LOC117599781 NA non-coding downstream 151536 2147215 ~ 2151238 (+)
G288461 SF3B6,sf3b6,pm14 non-coding downstream 219898 2215577 ~ 2218638 (+)
G288512 NA non-coding downstream 329979 2325658 ~ 2326289 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 635344 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 730828 1259176 ~ 1264632 (+)
G287892 NA other upstream 751788 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 1097050 807193 ~ 898410 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other downstream 441 1996120 ~ 2021263 (+)
LOC113546780 NA other downstream 137479 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 489357 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1947815 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1992373 3988052 ~ 3988123 (+)

Expression


Co-expression Network