ptchd4 (ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530)


Basic Information

Item Value
gene id ptchd4
gene name ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 1996120 ~ 2021263 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341376
ACTACACGTTCGCGCACCTCTGCGTGCTCGACGGCCAGCGCGAGCCCCGCCGATGCGTCCTCGATGATATAATCGCGATCTTCGAGGACATCCGCGAGGCCATTCTGAACAACAACACGTTCGCTAAAGTGCCAGTGAGCTACCCGAACACCACGTTAAGGgaTGGCCGAGTGGCATTTATCGGACACCAGCTGGGCAGTGTTGTGCTGGCATCACATGGGCGTGAGAGGCATGTCAAGTCGGCACGAGCTGTCCAGATCACTTACTACCTACGTCGGCTGGCTCCCACAGTGCAGGATGCTATTGCTGAAAAATGGGAGAGCGAGTTTGGCAAGATGGTGCAACATTTAGCAACAGCCAGCCCTGACCTGCATGTGCAGGCATTAACATCGTTTGGTCTGTGGCGTGACTTTCATGCTACAGGTGCACTGGCGAAGGGCGAGGTGCTGGTGGGCCTGGTGCTGGTGCTACTGGCTGCCACCATCTCCAGCTCTATGCGCGACTGTCTCCGTGGTAAGCCCTTCCTGGGGCTGCTCGGTGTGCTCACTGTCTGCAGCGCCAATGTCACCGCTGCTGGCATCTTTTTCATCTCGCATGGCAAGTTCAACTCCACACTGCTCGGTATCCCCTTCTTTGCGATGGGTATGTGTTCCTTGTTGCATGTGATTGTGCTAATTTCTATAAATGTCTTCTCAAAAAGTCACCTTTGTGGGCTTTTGTTTGTTCctgt
>XM_026946831.2
GAGATTAACGCGGATcgggtggaggaggaggaggcatgTCTTGAGCAGAAACTAAAAaaagcacacgcacacacacacacacacacacacacgcacgcacgcacacacacacacacacacacacacacgcacgagCACACAGAGGGTAGCCGATCAATAATCTGGTTTTTTGCAAACCGCAGCATGGGAGCGCGTGTCACATGCACTTGCTAGGCAAAAgcagcagaggaggaggtggtggaggaggagaaagaggaggaggtggtggaggaggaggtggatgATGCTGCGGCAAGCGATCTACGGCGCGCTCAAAGCCTCGTTCTACTGGCTCGGCTTGTTCGTGAGCCGGCACCCGGTGTTCTTCCTGACCGTGCCCGCGGTCCTCACGGCGCTGCTGGGCGGCGCGGCGCTGCGTGGATTCGCGCCCGAGGCTGACCTGGAGCGGCTGCTCGCGCCCGCGCACAGCCTCGCCAAGGTCGAGCGGCGCCTCGCCGACAGCCTCTTCCCGGTGGAGCGCTCCAAGCACCGCCTCTACTCGGACCTGCACACGCCGGGCCGCTACGGCCGCCTCATCTTGCTCGCGAAGCGCGGCGCCAACGTGCTCGAGCTGGCCGAGCAGGTGCTGCGCGTGCACCGGCACGTGCTGGAGCTGCGCGTCGCGCATCGCGGCTTCAACTACACGTTCGCGCACCTCTGCGTGCTCGACGGCCAGCGCGAGCCCCGCCGATGCGTCCTCGATGATATAATCGCGATCTTCGAGGACATCCGCGAGGCCATTCTGAACAACAACACGTTCGCTAAAGTGCCAGTGAGCTACCCGAACACCACGTTAAGGgaTGGCCGAGTGGCATTTATCGGACACCAGCTGGGCAGTGTTGTGCTGGCATCACATGGGCGTGAGAGGCATGTCAAGTCGGCACGAGCTGTCCAGATCACTTACTACCTACGTCGGCTGGCTCCCACAGTGCAGGATGCTATTGCTGAAAAATGGGAGAGCGAGTTTGGCAAGATGGTGCAACATTTAGCAACAGCCAGCCCTGACCTGCATGTGCAGGCATTAACATCGTTTGGTCTGTGGCGTGACTTTCATGCTACAGGTGCACTGGCGAAGGGCGAGGTGCTGGTGGGCCTGGTGCTGGTGCTACTGGCTGCCACCATCTCCAGCTCTATGCGCGACTGTCTCCGTGGTAAGCCCTTCCTGGGGCTGCTCGGTGTGCTCACTGTCTGCAGCGCCAATGTCACCGCTGCTGGCATCTTTTTCATCTCGCATGGCAAGTTCAACTCCACACTGCTCGGTATCCCCTTCTTTGCGATGGGGCATGGAACCAAAGGAGTGTTTGAGCTCCTGGCTGGCTGGAGAAGAACCCGAGAGAGTCTGCCCTTCAAAGAGCGAGTGGCAGATGCCTTTGCTGATGTGATGGTATGCTACACCATGACAAGTTCATTGTATATCATCACGTTTGGCATGGGCGCCAGTCCTTTCACCAACATCGAGTCCGTGAAGGTGTTCTGTCAGAGCATGTGTGTGGCCATCCTGGTAAATTACTTCTACGTCTTTTCTTTTTATGGCTCCTGCCTGGTGTTTGCTGGCCAACTTGAGCAGAACCGCTACCACAGCGTTTTCTGCTGCAAAATCCCCTCAGTAGAATACCTGGACCGCCAGCCCACATGGTTCAAGACCATGATGAGTGATGGCCATGATCTCTCCACACACCATGACAGTATGCCCTACCAGAATCACTTTATTCAGCACTTTCTGAGGGAGCATTACACAGAGTGGATTACTAACACATATGTCAAGCCCTTTGTGGTCATTCTCTACCTGATTTATGCCTCGTTTTCATTCATGGGATGTTTACAAATCAGTGATGGCTACAATATAGTGAATTTATTAGCCAGCAATTCACCCAGTGTGTCATTTGCCCTGACCCAGCAGAAATTGTTCAGCAACTATAGCCCAGTGATAGGATTCTACATCTATGAGCCCATTGAATACTGGAACTCCACAGTACAGGAGCACCTCAAGACACTAGGGCAGGGTTTCAATAAGATTTCATGGATtgataattactttaattatttgAAGGTCACAAATGTCAGTGCATCAACCAAAAGTGATTTCATAAATATTCTCAAGACTTCATTTCTAAGGAGACCAGAGTATCAGCACTTCACAGAAGACATCATTTTCTCAAAAAATGGGGATGAGTATGACATCATTGCATCCAGGATGTACTTGGTAGCCAGAACCACAGAGAAGACAAGggaggaggtggtggagctGCTTGAGAGACTCAGACCCCTCTCTCTTATAAACAGCATCAAGTTCATTGTCTTCAACCCCACCTTTGTGTTCATGGACCGCTACAGTTCCTCGGTTGTCTCCCCAATTCTAACATCAGGTTTCAGTGTCCTGACCATCCTAATCCTCACTTTCTTCCTTGTCATTAACCCCTTAGGGAACTTCTGGTTGATTTTGACCGTCACCTCTGTGGAGCTGGGTGTCCTAGGCCTCATGACACTCTGGAATGTAGATATGGACAGTATCTCTATCCTGTGCCTTATTTATACTCTCAACTTTGCCATGGATCACTGTGCCCCTCACCTCTACACATTTGTACTGGCCACCGAGCACACCAGGACTCAATGCATCAAGATTTCGCTCGAAGAGCATGGGGCAGCCATTTTACAGAATGCCTCATGCTTTGTGATTGGGATAATGCCCCTGCTCTTTGTGCCTTCCAACCTGACCTACACACTGTTCAAGTGCTCGTTACTCACCACAGGATGTACAGTGCTGCACTGTTTCATCATCCTCCCAGTGTTCTTGacttttttccctccctccaAGAAAAGGCACAAGAAAAAGAAACGGGCAAAGAGGAAAGAACGGGAGCGGGAGCGGGAGAGGGAGGAGATTGAGTGCATCGAAGTCAGAGATAACCCTGACCATGTGACCAGTGTCTGagatgtttgtgtgagtgtaacAGGGAATGTCCCGTCCAGTAGGACGAAATTACATGTAGCATTTCACAGGTCATGGGGGTCAAAGTGGATCCACCTTTTCAAGTGGGATGACCCTCAACAACTCCACTAATCATCCAGACTAGTACATAGCATCTGCCTGCTTCTGTTGCCAGGTCACCTGTTATTTGGGTAAGACAAAAATTGGAAGTCTGGGAAGTAAAGCCTGCAGTTCATGTTAAAATTATCGCACGAGCTGCTAAAAAATGGGGAGTTATTTCTGAGAGTAGATAGAGAGAGTAGTACTAATACTATTAAGTATTAAATTGTCCAAAATTGTAGCCTATGTCCTAAATGTGGCCAGAAATcaatatgtttataaatgaaaggctgaaaataatatatttaagatTACTGAAAATCCTGTGTGctgaatatgtatttttattagacAAAATGTATAGACTTGGAATTCAGTAATTATCGTCCTGGTTATCAAATATGTGCAAAAGCTAATGAGCAAGCTTTCATAAATGTAGCATGACTTTAAGTTTATTGAATAGTTGAGCAGAGCAGATGTTATACACTGTCCATTCTACACAAATGAACAGGAAGGTACAATTTCATGACACTACATTGGAACAAGATGTCCTTTGTAATTTGTCTATGTTTCCATCCCTTTTGCAGCATACTGAAGGTGTAATACAAGAACCAACAAGCATGTGCTGAGAATTAACCAAATGTTTCAAGTCATTTTATATGTCCAGAATAGTAGCTGAATTTATGTGGATAAATGGACATTACAATAGACATGGTAGTGACATTGAAAGTGGCAGTGAAAGAATTTTTCCAAATTATTACCAATTACAGTCAGCAGCAGCCTTTGTTTATTCACCCACATTaacattctgctttttttttcctttctttttttaataaagtgactTACTAGTAAGACAGTATACAGTCCAAGCATCTATCTTAAAGAGCTGTCAGCAGTGCCAGTGTTATAGAATTAGATATGCACCAGTTGACAAGAACAATGTGCAAAATAGCTGTAGGAAGAACACAGGCTGCAGGAACTAAACACAGTAGTTGGAATAATTGCTAGAACATAGAGAACAATGAATATTAGGTACATAAGCAGTCCGTCAactaaaacaatacaatattaaaaataatacataacaataaaaatagtgTAGTATGAGCAAATTCCTATGGGCTAtattacaacaataaaaaaggTACAATACATACCCTGCCATTACGAAAATATTATGTTATCAGGCTTAATTTTTTATCATTgcctaatataaatattatggtCCTTTGATTTTTAACAAcatattttaaaggaaaattccaTCAGATACAACTAATGAGCTAATCTAACTTATGACAGGTAGTTTAATATTAGTCAGCCATTAGTTCAACCTCAATTTTAGAATAgcataaaacatatatttaaagttgactGAGTATTTTAGGAGCTAGTATTTAATTTATCCTCGTTTGTGAAAGCCATGGGTAAATAATGTTGTCTATGGCAATATGCTGGGCAAAATAAAATGCTAGCTAtctgctacaaaaaaaaactttgaaataTTGGTGAATCTTCTCCTGTTAAACATTGGATTTGCTATGTTGATTGTCAACTATTtgtattagatttttatttgtgaaaacTAGCATGTGTGATTATTGCCAGAGATTGTTGCCAGTGTTAGATCCATTTGCTATTACTGCTCCAGTCAAGGGTGCAATCGTGAAGGTATTGACGAATTATTCCAAAGAAAGATAACTGCAAGAGAGCTACATTAACCAGTGTTTTACGCATCATGGTCTCAGGATTGTAAATCTGGAAGAATtcacctgattcagctcacaataaaattttacaaataGTTAAGGTTAGGGCATGGTCAGCAGGTGTGTCTTTTATTCTTACAGTCTTAATTTGTATGTAATTCAACATCACCTTAGTAACTCATTAGAATTCCTGCTTTCTGTGAGAACACGTTGAGACAGGCAGACTATGTGGACCAAAAAGTTGAAAGTGAGCATGAATATATAGCAATTGCAGAACAATACATCAAATACAACACTAACCCCATATTGAAGCAGTGGTGGCTTATTGAAGAGGATGTGTATGGTTTCCCAGAATGTCAGGCATTGAACACCTTGTGTAAATGAACACCATGTTCATCTGACCAGCCGTTAAAGCAAATGGAGGTCTTGATGTGTAACTAATGATGGCATCACTATGTAATTTTTATGTAGGAAGAGGGCATGCCAATGAAGTAGgctatataaagaaaagaaatgcattaaatcatATACTTCCCAAGAATGACTGTCTACgcatgtaatgtatgtatgcatgtatttagttagtgtgcatttttgtttgtttttacattttgagaaatgttgcaaca

Function

symbol description
ptchd4 Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human PTCHD4 (patched domain containing 4).

NR:

description
PREDICTED: patched domain-containing protein 4

GO:

id name namespace
GO:0005886 plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008158 hedgehog receptor activity molecular_function

KEGG:

id description
K24682 PTCHD; patched domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU341376 False 730 TUCP 0.55 2 1996797 2008806
XM_026946831.2 True 5408 mRNA 0.45 3 1996120 2021263

Neighbor

gene id symbol gene type direction distance location
si:dkey-1j5.4 LOC108257701 coding upstream 80260 1912614 ~ 1915860 (+)
lbr lbr coding upstream 94127 1892769 ~ 1901993 (+)
enah enah coding upstream 106927 1824985 ~ 1889193 (+)
ppil6 ppil6 coding upstream 195202 1786487 ~ 1800918 (+)
ak9 ak9 coding upstream 214843 1761934 ~ 1781277 (+)
tnfrsf21 tnfrsf21 coding downstream 71212 2092475 ~ 2119917 (+)
LOC117599673 NA coding downstream 101298 2122561 ~ 2131271 (+)
adgrf3b adgrf1 coding downstream 129971 2151234 ~ 2158694 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding downstream 141168 2162431 ~ 2181156 (+)
tdrd6 NA coding downstream 168496 2189759 ~ 2212201 (+)
G288207 NA non-coding upstream 441 1995460 ~ 1995679 (+)
G288192 NA non-coding upstream 61337 1934577 ~ 1934783 (+)
G288171 LOC108257608 non-coding upstream 297953 1695908 ~ 1698167 (+)
G288134 NA non-coding upstream 397527 1598391 ~ 1598593 (+)
LOC117599747 NA non-coding upstream 428803 1566196 ~ 1567317 (+)
G288225 NA non-coding downstream 5606 2026869 ~ 2073881 (+)
G288242 NA non-coding downstream 49771 2071034 ~ 2071276 (+)
LOC117599781 NA non-coding downstream 125952 2147215 ~ 2151238 (+)
G288461 SF3B6,sf3b6,pm14 non-coding downstream 194314 2215577 ~ 2218638 (+)
G288512 NA non-coding downstream 304395 2325658 ~ 2326289 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 636004 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 731488 1259176 ~ 1264632 (+)
G287892 NA other upstream 752448 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 1097710 807193 ~ 898410 (+)
G287625 LOC106958509,LOC105896829,LOC107690788,LOC107726395,LOC107671222,LOC107579420,LOC107719248,LOC106963510,LOC107723971 other upstream 1098758 806306 ~ 897362 (+)
LOC113546780 NA other downstream 111895 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 463773 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1922231 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1966789 3988052 ~ 3988123 (+)
G289531 NA other downstream 2033194 4054457 ~ 4070367 (+)

Expression


Co-expression Network