G288225


Basic Information

Item Value
gene id G288225
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2026869 ~ 2073881 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341394
CTTCTATAcataaagatatttatttagcttgggaaaaaaaaaaaaaatctcagttcatGCAATTCAGTTACAAAAATCATGTAAACAGGTTCACTTGGAGATACGTGCTGAATGTCTGCACAACAATTTTCcccacatttttaaataaaaatggaatgtTAAAGCCAATTACACTCTACAGAATTTAAGTTGGAAAAACGTCATAACTGAACAgcagaatatttatttcatttaactcgACATTGTatagttgtgtttatttattgctatAGGGATTAAAATGagacacgcacacgcgtgcgcacacacacacacacacacacacacacacacacacctgtgcctGCATTTGCCGGACCCCGGCatttgtgtgtggtttttgagactGTCCTGCCAGGGTCTGATTCACAAATGCAATTCAAAGTACTTCATCTTTCAGCCTATCAGGTGTGCTCTCC
>TU341398
GCAGAAACTGACACAGAAGGGAGAATGAGAGGTGACCCATTAGAGAGGAAAAACCTACACAGCAAAAGTTCATAGAGATAACCGCAAACAGAGTGGTAAGCGTTACGCAATAATTATAGCAATGAGGGAAGGCCGACTTGAAGCTGCCACCGAGTTCCATAGCATAAAAGGCACTtgaaacatataaataaaaaaataggttttaaaaaaacaataccaAAAATAGAGACATTGGTGTACATGTGGTCTAAAATGTGCATGAGCAGAGAAGACGAAAGGGAAAAATAGCATACTGTAAGTCTgttacatgcaggtgatttgcaCCATACCTGCAAGTTAGGTTTCAAAGTGGGTCATCATGTCCTTTAGGACCGAGCAATCACCTTGAGTGTgaatgaaatgcatttttatgttGCACCCCACAGGGGTTTCTAGAGTACTAGACAAACACTAGACAATGTTAGACTTGTGTGACTTCTATAcataaagatatttatttagcttgggaaaaaaaaaaaaaatctcagttcatGCAATTCAGTTACAAAAATCATGTAAACAGGTTCACTTGGAGATACGTGCTGAATGTCTGCACAACAATTTTCcccacatttttaaataaaaatggaatgtTAAAGCCAATTACACTCTACAGAATTTAAGTTGGAAAAACGTCATAACTGAACAgcagaatatttatttcatttaactcgACATTGTatagttgtgtttatttattgctatAGGGATTAAAATGagacacgcacacgcacacacacacacacacacacacacacacactccctgatGCAGAATACTTACAACCCTTTCTCACAGGAGTAAAGAAGCCTGAAGAGAGGGTACACTTCTAGTGTACTCAAACAAAGGACAACGTTCAATCTCTTGAATGCTATTAAGACAAATATATGAttcattacataaatatatcCAATATGTAAATCTGCATCAACCTTCCTATTGATACAACCTAAGATAGATGTGGTTGCTAAGACATTTTATTGATAGACCATCCACAGTGTTTGAGGATTTAGAAACATAGAAATGTAGATTCTTTTTTCCctacctttgttttttttttttctttccctacCTGTGTATACGCGTGTACGTATATTCCCATTCTTTGTAATTGCtgataaaaaatatatcttgCTGCAAAGCTAAGCAATAAAAGAGCTTCCAATATTAACACTTGTAAAACAGGCACGATAGTGTCACCCTGGatgaaaatgttaagaaacaatTAAAGGAAAGCTCCCTCTTGACAAAGCGACAGGATACATGGTAACTACAGCAGCGGAGTAGGTTATATATTCCATAGTAATCTGAAGAGGCTAATATCAAAAGATTATTGCTGCAATCATAAtagcttggaaaaaaaaaaatctaccccatgacataaaaataagaaaaaaaaaaaaaaaaagaatcccaTCCATGACTTTATACAGCTTCAGTAGTATTAAATTGCCTGCAAATCCAGCACAGTAGTATAGAATAAGGCCTCAATTGTTggcaaataaaaagaaaaagagaaaaagacagcgAGAAAAACCATATACATCAGTCTTAATTACACCATTCTATACCATATAAAACGCTCATTATGTGCAAATGTAAATCTTACAATTTCTGGAGTAGGTCAGTGACTCAAAGAATTAAGGGAATGATATCTGCCGCTCATGGACTAGCATCAAGTCGTGACGGCTTTCTTTCAGCAGCACAGAAGTCCCATCTTATGTTGATTGTACctgcttttttaatttctctatCTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU341394 False 458 lncRNA 0.38 2 2027343 2073881
TU341398 True 1796 lncRNA 0.36 2 2026869 2028706

Neighbor

gene id symbol gene type direction distance location
si:dkey-1j5.4 LOC108257701 coding upstream 111009 1912614 ~ 1915860 (+)
lbr lbr coding upstream 124876 1892769 ~ 1901993 (+)
enah enah coding upstream 137676 1824985 ~ 1889193 (+)
ppil6 ppil6 coding upstream 225951 1786487 ~ 1800918 (+)
ak9 ak9 coding upstream 245592 1761934 ~ 1781277 (+)
tnfrsf21 tnfrsf21 coding downstream 18594 2092475 ~ 2119917 (+)
LOC117599673 NA coding downstream 48680 2122561 ~ 2131271 (+)
adgrf3b adgrf1 coding downstream 77353 2151234 ~ 2158694 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding downstream 88550 2162431 ~ 2181156 (+)
tdrd6 NA coding downstream 115878 2189759 ~ 2212201 (+)
G288207 NA non-coding upstream 31190 1995460 ~ 1995679 (+)
G288192 NA non-coding upstream 92086 1934577 ~ 1934783 (+)
G288171 LOC108257608 non-coding upstream 328702 1695908 ~ 1698167 (+)
G288134 NA non-coding upstream 428276 1598391 ~ 1598593 (+)
LOC117599747 NA non-coding upstream 459552 1566196 ~ 1567317 (+)
LOC117599781 NA non-coding downstream 73334 2147215 ~ 2151238 (+)
G288461 SF3B6,sf3b6,pm14 non-coding downstream 141696 2215577 ~ 2218638 (+)
G288512 NA non-coding downstream 251777 2325658 ~ 2326289 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding downstream 374541 2448422 ~ 2453374 (+)
G288694 NA non-coding downstream 432688 2506569 ~ 2515375 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 5606 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 666753 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 762237 1259176 ~ 1264632 (+)
G287892 NA other upstream 783197 1243057 ~ 1243672 (+)
LOC117599757 LOC108262407,LOC108272324,LOC107745493,LOC108417841,LOC107715185,LOC107581013,LOC107738483,LOC107690133,LOC108419634,LOC107756941,LOC107569589 other upstream 1128459 807193 ~ 898410 (+)
LOC113546780 NA other downstream 59277 2133158 ~ 2142181 (+)
cnstb LOC108257742 other downstream 411155 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1869613 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1914171 3988052 ~ 3988123 (+)
G289531 NA other downstream 1980576 4054457 ~ 4070367 (+)

Expression


Co-expression Network