G288461 (SF3B6,sf3b6,pm14)


Basic Information

Item Value
gene id G288461
gene name SF3B6,sf3b6,pm14
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2215577 ~ 2218638 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341667
CCAGCCATTTAATTCCAAAAGTCAATAAAGATGCAAAATAACCATCCGGTGGTACATcacatgtacaaataaaaagctttatagCAGGGAAAAAAGTCCTAATAGCTCAATGTTTACTACATAAAAGTTCAGGTAAATTAGCTGTACAAAAGGtgaggtttatttttattctcgtTGAAAAGGGGTCATCTGGGGAGGAGAGGGATAATGACAGGGATCGTTTTACTTTGGGGGATCTGTATTTATGCCATATTTCTCCTTGAGAAGCTTCAGctgctcttcttttttctttgtatccATTTTCTGGAATGCTGTTCGCGTTGTAGTACAAAACAACCAGGTATCTGTTGCAAACGTTGAATCCAGAAAGGTGGTCACAGGCATTCTTAGCATCAAAGATGTCCTCATAGACCACGTAGGCGGTTCCCCTGGTCTCTGGTGTGTTTCCAACTCTAATCTGCCGAATTGGTCCATATTTCCCAAAGATGTCGTACATTTCCTCGGCTGTGATCTTGTAGGGAAGGTTTCGTATGTACAGGATCCTGTTCACCTCTGGAGGTAAGCGAATTCGCTCGCTTGGCCGCCTGCATCGCCATGGCTGGAACTTTTTCGTCGAAAACACCCCAAACTTGaagaaaaaagctttaaaacgtCGCAGTTGTTTTCACGAGCGGTCCGTTTACGCAATTTGTGAAGTCTTATGGCGCACAACAATGACGTATTTCCTGAAACATGCCCG

Function

symbol description
sf3b6 Predicted to enable RNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA processing. Predicted to be located in nucleus. Predicted to be part of U2 snRNP and spliceosomal complex. Orthologous to human SF3B6 (splicing factor 3b subunit 6).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU341667 True 739 lncRNA 0.43 4 2215577 2218638

Neighbor

gene id symbol gene type direction distance location
tdrd6 NA coding upstream 3376 2189759 ~ 2212201 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding upstream 34421 2162431 ~ 2181156 (+)
adgrf3b adgrf1 coding upstream 56883 2151234 ~ 2158694 (+)
LOC117599673 NA coding upstream 84306 2122561 ~ 2131271 (+)
tnfrsf21 tnfrsf21 coding upstream 95660 2092475 ~ 2119917 (+)
fzd3a fzd3 coding downstream 117432 2336070 ~ 2354598 (+)
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding downstream 218060 2436698 ~ 2439040 (+)
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding downstream 236155 2454793 ~ 2474603 (+)
stmn4 stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074 coding downstream 393563 2612201 ~ 2618880 (+)
paqr8 LOC100304624 coding downstream 421642 2640280 ~ 2644268 (+)
LOC117599781 NA non-coding upstream 64339 2147215 ~ 2151238 (+)
G288225 NA non-coding upstream 141696 2026869 ~ 2073881 (+)
G288242 NA non-coding upstream 144301 2071034 ~ 2071276 (+)
G288207 NA non-coding upstream 219898 1995460 ~ 1995679 (+)
G288192 NA non-coding upstream 280794 1934577 ~ 1934783 (+)
G288512 NA non-coding downstream 107020 2325658 ~ 2326289 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding downstream 229784 2448422 ~ 2453374 (+)
G288694 NA non-coding downstream 287931 2506569 ~ 2515375 (+)
G288734 NA non-coding downstream 362671 2581309 ~ 2608373 (+)
G288740 NA non-coding downstream 409120 2627758 ~ 2628318 (+)
LOC113546780 NA other upstream 73396 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 194314 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 855461 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 950945 1259176 ~ 1264632 (+)
G287892 NA other upstream 971905 1243057 ~ 1243672 (+)
cnstb LOC108257742 other downstream 266398 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1724856 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1769414 3988052 ~ 3988123 (+)
G289531 NA other downstream 1835819 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 2029692 4248330 ~ 4309929 (+)

Expression


Co-expression Network