G288512


Basic Information

Item Value
gene id G288512
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2325658 ~ 2326289 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341720
GCTATTTTTATaaggaaaaaatacattatattaatttatttaacaatgctACTGTTATATTTAGTAACATTATTAAAACCcacaacaatgaaaaatgtCTGAAACTGGTTACATTATTATCGGTGTTATATGACTGTTACCTGATCTGGGCTCTGAATCTGCAGCTCACTACATATTGTGTTACAGTAACAGCTGAGTTTAAGCCCCTGATTTCCCAGCTTTTGTGGAGAAACACATGCTGAGGTTTATGGGTCTGTAGTGAAGCCTAGTGGCCATTAGAGGTTATGTCAATTCAAATTcacttacaaaataaataaataaaaaacaactattaaaaacattttgcattgttaaaaaaaaatcacagtctTTTGGAGACacaatcacattattattaacctACCaccatttaaaagaaagaaagaagagtaCACTTGCACTTTACAGCACCAACATTACAACTAGCCaggtaaagagatgtttaaatGGGTTTTAATTATCAGGTAAAATAATTTCccaaacattatttatttatgggcTAGAaaacattctctcacacacacactctcactcactcactcactcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU341720 True 587 lncRNA 0.32 2 2325658 2326289

Neighbor

gene id symbol gene type direction distance location
tdrd6 NA coding upstream 113457 2189759 ~ 2212201 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding upstream 144502 2162431 ~ 2181156 (+)
adgrf3b adgrf1 coding upstream 166964 2151234 ~ 2158694 (+)
LOC117599673 NA coding upstream 194387 2122561 ~ 2131271 (+)
tnfrsf21 tnfrsf21 coding upstream 205741 2092475 ~ 2119917 (+)
fzd3a fzd3 coding downstream 9781 2336070 ~ 2354598 (+)
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding downstream 110409 2436698 ~ 2439040 (+)
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding downstream 128504 2454793 ~ 2474603 (+)
stmn4 stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074 coding downstream 285912 2612201 ~ 2618880 (+)
paqr8 LOC100304624 coding downstream 313991 2640280 ~ 2644268 (+)
G288461 SF3B6,sf3b6,pm14 non-coding upstream 107020 2215577 ~ 2218638 (+)
LOC117599781 NA non-coding upstream 174420 2147215 ~ 2151238 (+)
G288225 NA non-coding upstream 251777 2026869 ~ 2073881 (+)
G288242 NA non-coding upstream 254382 2071034 ~ 2071276 (+)
G288207 NA non-coding upstream 329979 1995460 ~ 1995679 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding downstream 122133 2448422 ~ 2453374 (+)
G288694 NA non-coding downstream 180280 2506569 ~ 2515375 (+)
G288734 NA non-coding downstream 255020 2581309 ~ 2608373 (+)
G288740 NA non-coding downstream 301469 2627758 ~ 2628318 (+)
G288789 NA non-coding downstream 437981 2764270 ~ 2765055 (+)
LOC113546780 NA other upstream 183477 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 304395 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 965542 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1061026 1259176 ~ 1264632 (+)
G287892 NA other upstream 1081986 1243057 ~ 1243672 (+)
cnstb LOC108257742 other downstream 158747 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1617205 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1661763 3988052 ~ 3988123 (+)
G289531 NA other downstream 1728168 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1922041 4248330 ~ 4309929 (+)

Expression


Co-expression Network