G288581 (hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185)


Basic Information

Item Value
gene id G288581
gene name hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2448422 ~ 2453374 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341802
CTCACAGTCTTTCTTGGTATCGGGCCCCTTGGGTCCACGCACGCGTTCATCCACGGGGATCTGCTGAAGGAAGGTGAAGCCCTCTGGCTGAGGAAAATACGGCGTCTCCTTCTGCCCGAAGTTGAATTCCACAGCGCAGTTGTGGCAGAGGACATGTGGGAAGAGCGCACGTCCAGCCAGAGTCTCCTTACCGACTTTGAACGCCACACCGAGATCCTTCCCGTTCTTGGAATAGGAAATTTCAACTTCATCCCCATCAAAATTAAGCAGCCAACAACATCGTTTTCATCAAAAGCCTCGCCGTAGTCTTCAGTCACACAATTTGCTGTCTTCTTCCCCTTGACTGCGAAAGAATAAGAACACTCCTCCTCTCCTAGTGAGAATCAAAGGCATATAAATCACACGTTAATGTGGAGTAATACACCGGGGAAAGCGCAGGATGCATCTGTTCCTTTCATGGCACACAAACCTAAACACTAGGCTTGGCATGACGAACAGTATGGGAATCGCCAACGAATTACGACTACTGCGATTTAAATGTCTGGTGTCTGCAGCTTCAAGAtcgacagaaacagaaaaaaagtgcGTTATATCCAGTGtaatgtgtttccttttcacCTATTTTATCATCCTATAAGAAGCttaataacctgctgtctgactATGAAAACATCTTTTTCTGATGAATCTTAGTTTCCCTTAAAACTGTGAAAGTCTTCATTCGCAAAACCTGAACAGAGGATTaaactgagaaaatgaaaaatgaaacgtGTTGTTTATCAGGACGACTTTGTTATACAAGAGTTGAATAATTAATCTCCGATGCTCTTCACCACAGAGCACGTgtgtagtttatataattttatttcaattttataatgagcttagttacagctaataactttAGGTTTATTTAGTCTTGACTTCACTGCAGCATTCCTCACCTTCTTAACAggtaattatatttatatgtattttaaaaaaaataaataaataaataaaacgctAGAGACATTAGAGATCGCAGCTGCAGCAGTCTTGTAAGCAGCTCATGGCGTTTTCCCCCGCTGTAATGACGCGCTGTGGTCATGACGTGTTGCACGTGTCTGTCTACAGTATTATGGTCAGTGCACTTACCGAGCAGCAAACTGCCATTCGCCAGGGACCAGCCAATCTGCACATCATGGACATCCATGTTCTTACTCTTCACATGCTTCACAGGGATCTTCTCAATAATCTGCAGGTTTATTTTATCACAAGTCATTCAGACGCCCGATTTACTCTACACGCAGAGATAAAACGCACGCAGTGTATGAAGGGCCGCGATTCTCACCTTCATTTCGATGCAGACTTTTCCTTTGCTCACGCCGTAGGAAGCTCGGCCACCGGCCCAAAGGTAGGCAAAGCTCTCCATCGTGAGTGAAGTGGCGCTGTAGCGGTCTCGTGACACTTTGAAGTGCAGGTCACAGTTGTCTGGTCCAGACACACCAGAGTATCATCAAACTCCTCGTCCTCTTCCTCCAGAGGTGGCAGGGGAGATTTGGCCCTGAAACAGACGAGGCAGAGCCATTAAACCCAGAAGACAAAGGGCTAACGAGCCCTGACTGGAGCACACTGGCACAACAATCCAGAGTAAAGGACTGCCTCTGCCGCAGCAgtgagatttaaataaaaacacggACATCATTATGGCGGGACATAAGACTTAGCTTGGTTTTGCATAGGAAGTGTCTTTAAGGTCTAATCAGACAGCATGGGTCCTAAGAAAAAGCTGTTGGGCTTTGTTGTTAcagaaactaataataaaatagataaaGACTCGTCACTGATCAGAGGAGACATGATTTTCAAagtgtttaaattattaaaaagccCTCCAGTATATTCATATCCCCAAGCTGTGTCTCATGTAGGTCATGATGAGCCAAATACTTACACAGGAATGGACTCCTACAGAAGGTAGGTCTGAAACTAGTCgattttaagaaataaacatttcatggGAAGAAAAAGTGTTCAATTCTAATGTGCCATAAAAGGAAATATAATACTCACCTGCTTAACAAGCAAGAAATAAAAACGTACTGTCTTaccttcactcactcactcacacaaacGCACTCAAAGTAAAAACGAAACCAGTACCAAGAAATACAAAGACAAGGAACGCAATACAAACTGGACGTCCagagaaacaataaaaaaaaaaaaaaaaaaaactgaataaataatcCTGGAAGAGAACATTAAGTCAGAGAACAGCTAAATGTGCAATGCATGCAAGCCACGAAGAATGAACGCTGGAACTTTGCCACAACGACCCCATCGTGCTCGTTATCTCCTGCATGTGGTTCATTACCGGAACACCTCAATCGCCACAAGGCATGCGTTCGGCTACATGACACGCTGAGATCTGGACATAACGCCCCTCATCCCTTAGCCCTGTGAGCCAAAGGAGTGCTTTCACAAACCATATGTGCGTATAACAATGTCCCTGCCAAACAGTATGAGGAACAATGACATGGTTTTAAAACttaaatccaaataaatatAGAGATTCTGCAGTCTTCTCagacattttacacaaaagCACTGCAaggtaaggttttttttttttaaagaataaccctcaaatgatttatattttattaaagagggtgttttttatattatattatattatattataggtAAGGCATTGGCTTTTAAAGCCAATACATATTAAAAGTGGCACTTCGGGGATAATGAAGGCCATTACTCCCATCCTTACCGGCTGTATTTGCTTTCTTCAATAAATTCAAAGTAGCCCCTTCCATGTTCCTCTCGGCGTCTCTTAACACCCTTCTTATTCTTCTGATCAGCACTGATGTCTTTGTCCGCATCTcctttgaaaataaaacaaacagtgaTGAAATGCTCAGGCGTGTTGGACCCTGGTTAAGGGTGGCCCACACATCCAGGAGCTCTCAGAGGCCTCCTTCCCACACGCTTACTCAAGTATTCAGTTGACCACCTCtgatgagtttaaaaaaaagaaaagaaaaaaaagtgtattcaTGCtctagatatataaatatatcaggGTGAGAAGCCCATTCTGGTGGAAATGGACCAGAAGCTTAACAttacatttcaaataatatGAGCAATGAGGaacaataatgttttatatttacactcaGTCCTTTGTGCCCCCCTCCCACACAAAATAAAGGGAgaataaacgtgtgtgtgtgtgtgtgtgtgtataaatacacCTGGAAAGGGTTTAACTTCATGACCAGTTACTTACATGCTGATCATTTTTCCAGCACTGACGCGGTACGTGACGTGACCTCGGTTAGCTTCAGGGCTAATCTGATTAGTCAACATGTACAcccacattacacacatatgctgttaaatttatttacatttatatttctatagagagaaaaagagctaACAAGCTGCAGTCCTGCGCCAGAACCGAAAAACATATCCGTGTTTAAAACCTCTAAAGTCGGCTAAGACTAACAAATTAGCAAATGATGctagacaaaaaaacagcttcctCACCAGCAGAGGCGCCGTGTATCTATCAGTTATAATCTCTAGTGACCGaagaaaatctttttaaaatgataaaaataaaaaaaccagcCGTACAAGAACGTTCATTAATTGCCTGGACAATAGCAGGAGCTCCCTGGAGGCCCcatgagctctctctctctctctctccgctcattgtcccagcagcagcagcagcagcgcggCGCTAGTGACTCGCACAGACTCTCTCCGTCTCCAGGATACCCGGATAGGCTAAGCTAGGCTAGGCTAAGCTAATTAGCTCGCTGGCTAACGGGGTAAAGAGTGCACCGGGATTCCGGGCCGAACCTGCACAATAAGCGCAAGAAAGAAACTCTCCTGATAAAATAAACAGGACACCAATAAGCTAAAGATTTCACGAACCCGCCGAGAAGCCGCCCTTGCTGCGCTACACTAAGCGCTTTATCCACCGCGCGAGCGACAAAAGCCGCTAAACGGGCCACAGCGTGAAGGCTCGCGCTTTAACCCCCTGCAGCGGAACTCACCCTCAGCCGCCTGCGACTCGCGCTCACCGTCTTCTTCCTCGATTTTATCGGCGGCGtcgtcttcctcctcctcctcctcttcttcctcttcgtCCTCCTCGAACGCTTTGTCTATCTCAATCCCGGCGTctccatcttcctcctcctgctcctgctcctcctcctcgtcgGCCATTTCGTCGTCCTGCCCAATGTCCTCCTCGCAGTTGCCCTGCTCGCTCTCCGGcgcgccgccgccgccgcctcCATTTTCCTCCTCGGCCTCCATGTTCTCTCCCGCGGGCTCTTCGTCCTCCTCCAGCTCTTCGCCCATGAACTCTTGCTCGAGCTCAGCGCCATGCCCCTCGGCGCCattttcctcctcttcatcttccGCCTCGAGCGCGGCGTCTCCGGCCCGGGCCTCGGCGTCGAGCGCGGCCTGCAGCCGGTCCATGAGCTCGGCCTTCAGGCCCTTATCCGAGAGCTGCCGCTTCTTCAGCTCATCCTTCAGCTCGTTCACCTTCAGCTTCTTCACGTTAATCGTGCTCATGTTTGCTCTTGCTTTACAAGTAGAAATTACTGGTCTGGTTCGGATGTAAAATGTTTCTGTCGCGCCTCAGGACAACAATGAGCCGCCTGCTTCAGACTCCACAGCGCCGAGCCGCGTTGATCCCCGAC

Function

symbol description
hnrnpu Enables several functions, including ATP binding activity; basal RNA polymerase II transcription machinery binding activity; and nucleic acid binding activity. Involved in several processes, including protein localization to organelle; regulation of cell cycle process; and regulation of nucleobase-containing compound metabolic process. Located in several cellular components, including chromosome; microtubule cytoskeleton; and nuclear lumen. Part of CRD-mediated mRNA stability complex; catalytic step 2 spliceosome; and telomerase holoenzyme complex. Colocalizes with RNA polymerase II transcription regulator complex. Implicated in developmental and epileptic encephalopathy 54. Biomarker of colorectal cancer.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU341802 True 4739 lncRNA 0.45 3 2448422 2453374

Neighbor

gene id symbol gene type direction distance location
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding upstream 9382 2436698 ~ 2439040 (+)
fzd3a fzd3 coding upstream 93824 2336070 ~ 2354598 (+)
tdrd6 NA coding upstream 236221 2189759 ~ 2212201 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding upstream 267266 2162431 ~ 2181156 (+)
adgrf3b adgrf1 coding upstream 289728 2151234 ~ 2158694 (+)
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding downstream 1419 2454793 ~ 2474603 (+)
stmn4 stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074 coding downstream 158827 2612201 ~ 2618880 (+)
paqr8 LOC100304624 coding downstream 186906 2640280 ~ 2644268 (+)
LOC113546789 NA coding downstream 192699 2646073 ~ 2654271 (+)
znf395b znf395 coding downstream 203395 2656769 ~ 2664965 (+)
G288512 NA non-coding upstream 122133 2325658 ~ 2326289 (+)
G288461 SF3B6,sf3b6,pm14 non-coding upstream 229784 2215577 ~ 2218638 (+)
LOC117599781 NA non-coding upstream 297184 2147215 ~ 2151238 (+)
G288225 NA non-coding upstream 374541 2026869 ~ 2073881 (+)
G288242 NA non-coding upstream 377146 2071034 ~ 2071276 (+)
G288694 NA non-coding downstream 53195 2506569 ~ 2515375 (+)
G288734 NA non-coding downstream 127935 2581309 ~ 2608373 (+)
G288740 NA non-coding downstream 174384 2627758 ~ 2628318 (+)
G288789 NA non-coding downstream 310896 2764270 ~ 2765055 (+)
G288834 NA non-coding downstream 416222 2869596 ~ 2916810 (+)
LOC113546780 NA other upstream 306241 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 427159 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1088306 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1183790 1259176 ~ 1264632 (+)
G287892 NA other upstream 1204750 1243057 ~ 1243672 (+)
cnstb LOC108257742 other downstream 31662 2485036 ~ 2496052 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1490120 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1534678 3988052 ~ 3988123 (+)
G289531 NA other downstream 1601083 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1794956 4248330 ~ 4309929 (+)

Expression


Co-expression Network