cnstb (LOC108257742)


Basic Information

Item Value
gene id cnstb
gene name LOC108257742
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2485036 ~ 2496052 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341918
ACAATAATCGatacataaattatttttgaCTGGAGTATCTTCGAAATGCTCTTAAAAGCTTTGCCCTAACTTCAAAATGATGCCAATACCAATGTGTAAAGATTGCAGGCTAGGTACTGTAAATACTGCTGACTATTCATTATCCATCCTCTGACATTCTGGCACAGTTGTTCCTGGCTCTTAATGAAATAATGCCCATAACTGCAGGCAAAATGAAATCTTACAAGCAACATTTCAAACAACAGAGCAGTGGACTGAAGTAGATCATTAAGTTTATTAATGCAGAGGATAAGGCAAGTTGGTTAGCTCAAATACCATTCTCGCTGCTTGGTAAAAACTTTCTGTGCCAACTACTGCTAGTATCTAGACAGATCTTTGGCACACAAGCCTAGGAGGCACTAGACTGTTACCTCCTTCTGTCCAGAAACAACCTTGACATTTTGAGGCAGCAGACTATATGTTAGGTGGTCTTGTCTGCCATTACTAGAGTTGGATTTTGTCAGTGCCAGATCAAGGCATGACAATGCTTTCAGGGCATTATTCACAGAATGTTACATGAAAGCCATGCCAACTAATAAGTCTCTGATAaaagattcattttcacattccATTTGCTGTGGAATACAGTTGGTTTCTCCCCTTTCACATCAACAGAGTGACGTACACACCCTTTTGGGTTGGCTTCGGCACCCAGGGTACTCACAAAATGTGTCACCTTAGACCTGGGATTAGGAAAATTTACAACATGGTAATCCGTGAGACATGTGGTTTCAGTTGAACAGGTCACTGTGATACAGCAGATCACACACCTCGAAATGATGGGTCTGATCCCAGCATACTGGCATGTTTGGTCATGCACGTGAGGGTCAGACATGCTCTCATTAGTGTGTGTGCTCCATATAGGCTCCCGCTGTATGAAAGCAAGGTTAAAGTTTCTCACTATGGTGggggcatacacacacacacacacacacacacacagtatatacacatacaaatacacaagcACTTTTGGACATTTGTGAAGCGTCAACATGATATCACGGTCCAGATTCATCAGATTTTACAGGTTGAATGTTGCTTGTGCACCAGTGGGATTGAGCGATACTCATCCTCAATAGAGGACAGTATCAAGATGCTGACTGATTCTTATCCTCAATGAAAAAACAGTATTAGTACAGTAACAAGGGAACAAGCACACAAGAATCCTCTAATCATTCTGAGGGAAACCACACTGACAGTCTTCCACTACATTCATAACCTTCTGTTTTCAGAAACAGATAACAGGATATACTGAAAACCATGACATTGAGTGTACAGTCATGACATTATCCTGTAGAGTCTACTCCTAATAGAAGCATTCACATGCATTATTTCTATTTGCCCTGAATACATAGTGCAGTCAGCTCACGTGTCTTCAAAATGCCTGGGGTTAATGTGACATCAgtacactcactgtacactGACATGATTCTAATTATATCTTGCAAAATTACTGCTATAGCGACTGCTTTTTGTGATATACGAGCTAAATCTCGCTTGATACCTAGATTTCTGGCCTACACACTATCAATTTGTCAAACTGCCATCTTAAAACTGAATGTTTATTAGATTAGAAGGTAACACATGTTTGCTTTAAGATCAGCACTTGCAACTGTAGGAACACTGTAGCCAAACCTAATTGAGTTAAAGTTGGCTTTATTCCTCTAATCGTTTACTTTTGTTATAGATAGCAGAAGCTTATTTTCTTGAAGAAGACTATCAGTGGGCAGTTCACTTCCTGCATTTGGAGATGCTATATCATGAGAGACTGCTTTCCAACTTGGCCTCCACGCAGAAGGCCTGGGAATCCAGGTGGAAGGCTGTTTCTCAAGCCAAAAATGGTTCTCCTGTGAAGATCCACTATACCGAGCCCGAGGCAAAGCACATGAACTCTCTGAATCTCATCTGCAGATCACACCGAAGACCTAATCGCAGTGGGGAAAAGGTAACCAAGGAGAGCATTACAGTTCAGTACAGTTCAAGTACAGGAAATCCTTTTAAAATGAAGGAGTGGACAGAGCAGCCATGGAGTGACCCAGAAGAGGAAAATGGGGGTGAAGAAGAGGACAGATGCCTTACTGGACAATGATGAAGAGGGTGAAGACTCCTGTTTGTTCCTCCTTTTCCTGTGCCTGGTAACGGTGGTCATCAGCATGGGAGGTACCATGCTCTACTGCTTCCTGGGTGGGGCTTATTCAAATATTTGCACTGATTTCTCACACAACATGGACTTCTGCTCTGGATTTATACGCCGAGTGGTGGACATTCTCACACACTGGTTCATTCCTGCATCATCATAGCCCTGTTGCACTGGTAACACACTCCTGTTTTTCCTTCTAATCTGTTTTCATTGtcaaacagcagaaacaaaGGATACCTCTTTACCTGATGAAGACAACTGGACAAGCATTCATGTGTAAAAGCAGGCGAACTTAATGTCAGTTAGTGGAGTCTGAGCTTCCACTATACACAGATTGTGTAGaattcatattatattatattaactaCTGCATCAGATTAACTAATAACTCTGTTGAGATAATTCCGCTGATGGCTTGTTTCACCagttctattttatttcttttgttgaaATATGAAGAAATAATGTTCCTTAATTATGTACTGGTAACTTTATACTGCACAGTTGACAACTTTATCACCACAGAATTTGCTTGCTTATAAATCTTAACCTTgttttgtattatataatatcagGCAATATTTTATGCTCACAATCTTTTATGACTCACAAGTGCACACATCTGGAAATTCTTTGTACATGATGTACatgatgtgcaaaaaaaaaggttgattcGTCGCAGCAGAGGACCAGATGAAAAGCAGGGTAGTATGTGCTCTGAATTTACTGTTAAGAGAATCTATTTAATAATTTGTACATAATTATGGCTAGACTCATTTATGGATAGACACTGAAATGcgtcttttttcatttttattttttcatattccGAACTTTATTGTTAGCTATATTCACTGTCCCATTCTTAAAAgtctgtatgaaaaaaaaaaatgcttctgttAAGTGTGCCCTCAA
>XM_026946818.2
CTCATCGAAAACAGCTACACAGCTGTAAAAGCCAAAACCCAAACCTGATTCCAGATGTGTGTGTCAACCAGGCAAAGCTCTGCATACAGAAACCACTGGACTACGGCTGCAGCTGCAGGTCTTTATGGTGTTCGCTTTGCAATGCAAATATTTGAACATTGAATAAGTAATGGTCACCTGCCAGAATATTTTAAAGTTATGGGAGACCCCAAAACAGAAGAGGACATGAGAGGACAGGAAGACCACATCACTCTGTGGCCCAATGGTACAGAAGCGATCATCAGCTCAGACCTCTCTGTTTCTCATGAGAACCAGAACAAATCGATGATGAGAGAAATGATGGATTGGCCACTGGAGAAACAACACATGATGAATAACAAGCCAGAAGAGAAATCTGAGAACAATACCATAAGGTTCTCCTTAGATGGCAGTGCATCAGGTAATTTGCATAGTGCTACAGGGCCCAGTCCTGCCTTTTTGGCTGCATTGGCTTCTCTGGGTGAACACACCGATCACATGCTCTTGCCTCACTCGTTACATCAGATAGCAGAAGCTTATTTTCTTGAAGAAGACTATCAGTGGGCAGTTCACTTCCTGCATTTGGAGATGCTATATCATGAGAGACTGCTTTCCAACTTGGCCTCCACGCAGAAGGCCTGGGAATCCAGGTGGAAGGCTGTTTCTCAAGCCAAAAATGGTTCTCCTGTGAAGATCCACTATACCGAGCCCGAGGCAAAGCACATGAACTCTCTGAATCTCATCTGCAGATCACACCGAAGACCTAATCGCAGTGGGGAAAAGCAGGTAACCAAGGAGAGCATTACAGTTCAGTACAGTTCAAGTACAGGAAATCCTTTTAAAATGAAGGAGTGGACAGAGCAGCCATGGAGTGACCCAGAAGAGGAAAATGGGGGTGAAGAAGAGGACAGAGAGGCTGAAAGTTTGACTGAGGTGGTGCAGGAGGCGGTGGCCAGAAGACAGCAGTTATCTGGGGAAGAACTGACTGAACCCATTGAAGTTGAGGAGACCTTTCCCTCCAATGGTCTCATCTCCATCTTGAAGAAGAGAACATGTCCGGAGGAATCCAGTCCTGTCAATCACTCTCCACCCAGAACCTCCTCCAAATTCAAAGTCCGCTTCAGTGAAACAGATGCCTTACTGGACAATGATGAAGAGGGTGAAGACTCCTGTTTGTTCCTCCTTTTCCTGTGCCTGGTAACGGTGGTCATCAGCATGGGAGGTACCATGCTCTACTGCTTCCTGGGTGGGGCTTATTCAAATATTTGCACTGATTTCTCACACAACATGGACTTCTGCTCTGGATTTATACGCCGAGTGGTGGACATTCTCACACACTGGTTCATTCCTGCATCATCATAGCCCTGTTGCACTGGTAACACACTCCTGTTTTTCCTTCTAATCTGTTTTCATTGtcaaacagcagaaacaaaGGATACCTCTTTACCTGATGAAGACAACTGGACAAGCATTCATGTGTAAAAGCAGGCGAACTTAATGTCAGTTAGTGGAGTCTGAGCTTCCACTATACACAGATTGTGTAGaattcatattatattatattaactaCTGCATCAGATTAACTAATAACTCTGTTGAGATAATTCCGCTGATGGCTTGTTTCACCagttctattttatttcttttgttgaaATATGAAGAAATAATGTTCCTTAATTATGTACTGGTAACTTTATACTGCACAGTTGACAACTTTATCACCACAGAATTTGCTTGCTTATAAATCTTAACCTTgttttgtattatataatatcagGCAATATTTTATGCTCACAATCTTTTATGACTCACAAGTGCACACATCTGGAAATTCTTTGTACATGATGTACatgatgtgcaaaaaaaaaggttgattcGTCGCAGCAGAGGACCAGATGAAAAGCAGGGTAGTATGTGC
>XM_026946819.2
CTCATCGAAAACAGCTACACAGCTGTAAAAGCCAAAACCCAAACCTGATTCCAGATGTGTGTGTCAACCAGGCAAAGCTCTGCATACAGAAACCACTGGACTACGGCTGCAGCTGCAGGTCTTTATGGTGTTCGCTTTGCAATGCAAATATTTGAACATTGAATAAGTAATGGTCACCTGCCAGAATATTTTAAAGTTATGGGAGACCCCAAAACAGAAGAGGACATGAGAGGACAGGAAGACCACATCACTCTGTGGCCCAATGGTACAGAAGCGATCATCAGCTCAGACCTCTCTGTTTCTCATGAGAACCAGAACAAATCGATGATGAGAGAAATGATGGATTGGCCACTGGAGAAACAACACATGATGAATAACAAGCCAGAAGAGAAATCTGAGAACAATACCATAAGGTTCTCCTTAGATGGCAGTGCATCAGGTAATTTGCATAGTGCTACAGGGCCCAGTCCTGCCTTTTTGGCTGCATTGGCTTCTCTGGGTGAACACACCGATCACATGCTCTTGCCTCACTCGTTACATCAGATAGCAGAAGCTTATTTTCTTGAAGAAGACTATCAGTGGGCAGTTCACTTCCTGCATTTGGAGATGCTATATCATGAGAGACTGCTTTCCAACTTGGCCTCCACGCAGAAGGCCTGGGAATCCAGGTGGAAGGCTGTTTCTCAAGCCAAAAATGGTTCTCCTGTGAAGATCCACTATACCGAGCCCGAGGCAAAGCACATGAACTCTCTGAATCTCATCTGCAGATCACACCGAAGACCTAATCGCAGTGGGGAAAAGGTAACCAAGGAGAGCATTACAGTTCAGTACAGTTCAAGTACAGGAAATCCTTTTAAAATGAAGGAGTGGACAGAGCAGCCATGGAGTGACCCAGAAGAGGAAAATGGGGGTGAAGAAGAGGACAGAGAGGCTGAAAGTTTGACTGAGGTGGTGCAGGAGGCGGTGGCCAGAAGACAGCAGTTATCTGGGGAAGAACTGACTGAACCCATTGAAGTTGAGGAGACCTTTCCCTCCAATGGTCTCATCTCCATCTTGAAGAAGAGAACATGTCCGGAGGAATCCAGTCCTGTCAATCACTCTCCACCCAGAACCTCCTCCAAATTCAAAGTCCGCTTCAGTGAAACAGATGCCTTACTGGACAATGATGAAGAGGGTGAAGACTCCTGTTTGTTCCTCCTTTTCCTGTGCCTGGTAACGGTGGTCATCAGCATGGGAGGTACCATGCTCTACTGCTTCCTGGGTGGGGCTTATTCAAATATTTGCACTGATTTCTCACACAACATGGACTTCTGCTCTGGATTTATACGCCGAGTGGTGGACATTCTCACACACTGGTTCATTCCTGCATCATCATAGCCCTGTTGCACTGGTAACACACTCCTGTTTTTCCTTCTAATCTGTTTTCATTGtcaaacagcagaaacaaaGGATACCTCTTTACCTGATGAAGACAACTGGACAAGCATTCATGTGTAAAAGCAGGCGAACTTAATGTCAGTTAGTGGAGTCTGAGCTTCCACTATACACAGATTGTGTAGaattcatattatattatattaactaCTGCATCAGATTAACTAATAACTCTGTTGAGATAATTCCGCTGATGGCTTGTTTCACCagttctattttatttcttttgttgaaATATGAAGAAATAATGTTCCTTAATTATGTACTGGTAACTTTATACTGCACAGTTGACAACTTTATCACCACAGAATTTGCTTGCTTATAAATCTTAACCTTgttttgtattatataatatcagGCAATATTTTATGCTCACAATCTTTTATGACTCACAAGTGCACACATCTGGAAATTCTTTGTACATGATGTACatgatgtgcaaaaaaaaaggttgattcGTCGCAGCAGAGGACCAGATGAAAAGCAGGGTAGTATGTGC

Function

NR:

description
PREDICTED: consortin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU341918 True 3097 TUCP 0.40 7 2489677 2496052
XM_026946818.2 False 1936 mRNA 0.43 10 2485036 2495853
XM_026946819.2 False 1933 mRNA 0.43 10 2485036 2495853

Neighbor

gene id symbol gene type direction distance location
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding upstream 10433 2454793 ~ 2474603 (+)
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding upstream 45996 2436698 ~ 2439040 (+)
fzd3a fzd3 coding upstream 130438 2336070 ~ 2354598 (+)
tdrd6 NA coding upstream 272835 2189759 ~ 2212201 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding upstream 303880 2162431 ~ 2181156 (+)
stmn4 stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074 coding downstream 116149 2612201 ~ 2618880 (+)
paqr8 LOC100304624 coding downstream 144228 2640280 ~ 2644268 (+)
LOC113546789 NA coding downstream 150021 2646073 ~ 2654271 (+)
znf395b znf395 coding downstream 160717 2656769 ~ 2664965 (+)
si:ch211-63o20.7 LOC108258100,LOC108439852 coding downstream 188321 2684373 ~ 2702470 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding upstream 31662 2448422 ~ 2453374 (+)
G288512 NA non-coding upstream 158747 2325658 ~ 2326289 (+)
G288461 SF3B6,sf3b6,pm14 non-coding upstream 266398 2215577 ~ 2218638 (+)
LOC117599781 NA non-coding upstream 333798 2147215 ~ 2151238 (+)
G288225 NA non-coding upstream 411155 2026869 ~ 2073881 (+)
G288694 NA non-coding downstream 10517 2506569 ~ 2515375 (+)
G288734 NA non-coding downstream 85257 2581309 ~ 2608373 (+)
G288740 NA non-coding downstream 131706 2627758 ~ 2628318 (+)
G288789 NA non-coding downstream 268218 2764270 ~ 2765055 (+)
G288834 NA non-coding downstream 373544 2869596 ~ 2916810 (+)
LOC113546780 NA other upstream 342855 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 463773 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1124920 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1220404 1259176 ~ 1264632 (+)
G287892 NA other upstream 1241364 1243057 ~ 1243672 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1447442 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1492000 3988052 ~ 3988123 (+)
G289531 NA other downstream 1558405 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1752278 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1832780 4328832 ~ 4338299 (+)

Expression


Co-expression Network