G288694


Basic Information

Item Value
gene id G288694
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2506569 ~ 2515375 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU341932
AGGggttatattcattttaattaattcagcTAGCTACAAAATGTCAACCACGTCACAGACTGACAGGATACAGAGGGAGTTTTTAATATTACATGCATTGAGGACACCAGTCTCACAGTTTAACCTATGTGTCATTCAGGTAAGGTATTTATTTGTCTTCTTATACAGACTATTCAACATCGTAGCAATTTGGTGTGCATAGCTCTAAAGTACAGAAGCAacaaaaacccttttttttttgtcatggattattttctttttctttttttttaaaccagtaaCAAACCACACAGGGAAAGTAAACTAACAGGATACAGTCTTCTTATAAAAGTAAGATCTCTCAGAAATatgcatctttgctttacattgcaaatgtttgtttatttatttttttctcagagcATCCAAAACCTATGATACAGAAAACAACTAGTCTCCACCATTCAGCACTTCAGTCATTATCTTTTCCAGGCTGCATAATCATTTAGAAAACAGGTCATTTTTGCAGAACCACCACTTTTGTCATGTCTGTTACAGTTCTTCTTTCGGTCATGTTGCATTATGTTACATCGATGGTCACagtctgtaaatatatattgaCAGAAAGAGAGCACTATTGCAAACTTGCAGGAATATGGAACGTTCAACTGTGTCCTAATACTGAGCATGCTTTGTCAATTTTTGCTActgccatgatttttttttatatttttaagacaagttttatttataagacTCTAAAATCTACTATTCATCATGCATAATGCACAATTCACACCACTTGGAATGCAATGTCTATTACAGCTACAGAATCTAGTTGCACTTTGTCTAAACAGTAACTGATTATGTTTGTGATGAGGAAAATGAACCAAGGAAGGATACTGTAAGTGCTTTTGTATCATCATCATATAATTAATCATCTTTTACCCATTCATCATTTGCCATGACAACATCAAAATAAGGAGCATGACAGTAGCCTAATGAAATGACACAGTTTTACTAAGacgatactgagatactgaaaAGGAAAGACAGTTTGTAGAGCATTCCTATTATATATTTCATCCAGTAAAGAgatttatatcatatataatatatatgtatacatatataagcgtgtgtatatgtatacatatatacacatacatatataggtgacaaaaaaagaataaaaacttcACAAGTGAGCTAGAGCCATCGAGCCAGCACTATATACAACCTTTGGAAAGAATGATACAGAGTATAAGAAATCATTTTACGAGGACTATCATTGAAAAAGCCGACAGACAGCACACAGAACAACATTTACAATGTAGGGGtgatatgtgcatgtgtgcaaacCTAGAAGGTAAATACCAAGATAAAAGCATGTTTGCGCCTTTTGACAAACTGCATGGTTAGTAAAAGCAGGCATTTCAGACGCTTAACCGCTGCCAAGCATCTTTGTGGCCCTCTGGTTAGCTTCATCAATCCTGGTCTTGTTGGACTCAGCCTGagagacaacaacaacaaaaagaaaatgcaagttattacagcattttgttttgtactttGCATTGTGCCCCCCATACAAGTATGCAGTGTTAAATCTGACTTAGTAGACTTATTGCCAAGCATAAAATACTGCCTATCCAATTACGCAATATAATAGTTTACAGTAACAGTAGCAAATGTGACCTCTTGAACATTGGGTGATTTAAAATTTTCCTAGCTGATCCTAGGCtcactattatatatatataaaacgtaAATAATACCATCAGTCAAGGTTGTttgcaagctagctaatgtgtAGATTTAACAAAAATTCCCTAGCCAAGTTGACTAGCAAGCTAACTAAGTTattagactaataataaaaaattgtgtcaTTAAAACTAGTAACCAAGATCGCTAATcacctagctaacattagggGTTACAGTGGTAGCAACTAAATGTTCCAACATTCCTATTTTCACCCAGGTGCAAATAGCATGTGACCGTATAAATGCATTTCCTTTTGTTAAAATCATAAACGAATATATATTAGTAATGTGATGCATTTTGTAACTTTTATAGACAGACGCATGATAAAACTTCACTTCCTCTAAAAATCGGAATGTTCTACTGGGACCTACCTTGTCCATGATCCTGTCAATTTGGCGATTCTGAGTATCAATCTCATTACCCATGTCAAGGGCCATGTGGCGCAGGTTACCAATGATGCCTCCTCCGCTGATGGCCATCTGTTCCCGCTCATCAACCACACGGGCAGGCTGGCTGTTCACGACACCATCCTGGTTGTTGCCCCAGGCCTTGCTGCCTCCACTCTTCATTGTTACATGGACAGGAGCAAAGACCACAGAATTTTCCTAGATCGTTCAAATTCTTTTCTGCATCCTTCATGTCCTTATTGATTTGGTCCATCCCTTCTTCGATGCGCTCCAGTTGTTCTGATTAAACAACAAGCAATTTATCCCCCACAGAACGAAGCACGTCAGAAGAAGAcagggaggaaagaaagaaaagaggaaagagaggacaaagaagagaagacagaaagaaaaaaaaaacttcagacaGTCACTGTgacaaaaggaaaacaaaggaggaaaaaaacggACGCCACCACATACGCAAAAGACCCCTCCGTCACATGGTCAGTACCTACTTGTTACACGGACATATGAAAAGGCCACAGCATTtccctaaatcttttaaatttttctCGGCCTCCTTCATGTCTTGGTTGATATGGTTCATGCCATCTTCAACACGATCGAGTTGTTCTGGTCAGGACAAAGGGATGACAGCAGTGGAAtgaattttattgtttttttatttttttggagaaaTGAACACTATCAAGCTGGATGTGGCTTATCTAGAGGGGACAGCATGCATTTGAGTGGATCTACTGACAGCAAAACGATACCTACACTTGAAAAccttccatatatatatataagatatttcCTTCTAAAATTAAATGGGTTtgagaacaaaaaaattgaCCACTTCATAATGGGAGGGTCCACAGAATATTGAAACAGATCCCTGAGGTCAAAAGCAGTAACAGTGACAAGAGCCCAGCAGCATTTCAAAGCTcttttgattttaattaaacCTCAGGAAAGAACTCTCTCACCCCAGCCCAAGGCTATAGCATGCTGAGTCAGAGTCTGCGAGTCTCactaaaacagtgtgtgtaaatcacaGTTTATTTGTCTGGGTGGGGGTAAGGCATGAACATGGCGGAGGTGGCTGCGTGATCAGTGGGGATGCAGTCTGGCACTGTTAGATATGTTGTtaggggagaaaaagaaaggcagaCTGTGGATGGGTCTGGAAAGAAGAAAGCCCAGCACCATCATCAGATTTGTAGAATCCCTGGCTTTGAAGCCATATTTATTGGTTTCTAGCATGTAGGCATATTCAGAGAAATCTCAGACAATTTACAGTGCACAaaacctggtcttttttcctaAATGTAACCATTATTAACCTCAAACTTTAAACATTTGCAATGGTGAGAATGTAATGGTTTTAGTGGCAATGAAATTTACTGAATTACAATTTGCCTTTCGTTACATCAAATAATTCCAATTTCCTTGAAATGTCCCAagctcatgtttttttaatcagggctCGAGGCAAAGTCACTGGACATTGGTTGGCactgtggattcattttctgataTCGTATGCCacataattacattacataGCATGTTTTTGACACATGTAACCAGGGATTATACAAAAAAAGATATTAGTGTTTAATGGGAAAGAGTGATGTTTGTCATCACCAGCTAAATCGatcgtttttttccccacacagagaaagaaactcattcttctttacatttaaaattttctctACTGATGGTACAGTTTTAAACTGACCAGATGTAAAATACAAAAGACAGTTAATTGAGAGTCTCAGTGGCcacacttttttctgtttagtgTGCATCTTGAAGTAAAGAGGCACAAAAGGTTGGAAGGACAGAAAAATAAAGGATAAGGAAAGATTCAGAAAGATGTTAGTTGAAAGGAAAACAGTGAATAAACAccctaaaacattaaaaaaaaaaatcgaactATTGATTGGTTCTTTAAGTCATCAATTTGATTCATCATCTGCGAATCAGTTAGATTACttaatattacttaatattacTTAATACCTGGTATACATTTACAATGAGAAATACAGATTCTATGTAAGTAATCATGTTTTAGCAAATCATGCtttcattatccatctgtaaaGCATTTAGACTTACCTCCTTGCTCATCCAGCATAACCAAAGTCCTGATACCAGCATCTTTACTCTATGCACCAAGAGGCATGGAGAGGTTGGCGTAGATGATGGTGAAAGAAAGTAGGAAAGAGTGGAAACAAAGATGAGGTACGATCACTAGGAGAAGTTACAGGATTCTTTTATGAGTTGGAGTCAAGGAAAGGTGCAGGATAACGAAATGTCAGGTTACAGGGTTACAGAGTTGTTTTATGAGTTGGACTCAGGGAAAGGTGTAGGATAAATATCAGCAGTTAAGAATGCACAGATACCAAACACACTGCCTTCTTCCTTTCCTCAGATTTAAGCATTTGCGTGATGAATCTTAATTATGTATGGCATGCAACATTGCTTCTGAGAAACCTGTTAGAGAGGCGATAAGGTGATATCTATGGACTGGGTCAGCACTGATTATAGTCTAATTGTTGTAGTTTATTTATCATGGAAACCATTAAAGTTCTTAAATGAATGGCTTAGTGGCATCCTTAAGGAAGGATTAAGGAAGCCTTTAGAATGGATAAATTCCTTCCGTATGAAGTTTGGAGTTCGACTTTTAGGATTCAGGAGCAAAAACGTAAGTGTTGAACCCTTCTGCTTTGGCCAAATAACTGCACTATGAAAATGATGCAGCAAATAGTCACTTCTGGGAATTATAATATCAGGTTAGACTTAATCATGACTTAAATCAGATTATCTTCATTCAGAATGTCATTTCTTAGTATTATTATATGATCCAGCCAACCTTTACCACATGTGCAAAAAGCCACAAAGCAGGGAATCTATGCTATAGATGAAAACATGTGAATGTCAATGCACAATGACGCTATACAAATTAGAGCACTGTGGTATCCTTGATTCTTGAACAGGGCAcacatgagtttttttttacattactaGTTCAGTTGTACCCTTTACACTCAGAGACTACGTTGGGATGAGGTTATGAAACACTAAGACACAGACATGGATATATTGAATAGTCATTGATTAGCTTTAGTGAAAGTATTGACTTCTGCTGGCCTGTGTATATCTCCCACCTCTCACGTTATTTTTATACacaagttattaaaaaaaccttCTTCACAAAATCAGGTGTGTTTCTTGGGATGTTTTCGCTCCACTGTTTGGAAGCATCAATTAATGTGCCTGAGCTTAAATCAGAAGAGCGGCTGCGTCAGCATTTGCGGTGGAAGCAGCATCAATGTTTCCTATAATCAAGAGGCTGCATGGTGGCATAAATCAGGCTGAAATGGAGCACGGCAGCCACGCCTGCTTCGGCTAGTAAATGAATCCTGAGGGGTTAATGCGTTAGTGTCAGGGTGTCCTTCCAGCTCTGGAAAACCTGAAATAAGCTGCTGACCGTCTGGACTGTGAGAATGTATCGCACATTTTGCAGCCTAGTTTATCTAGGTCTTGTCAATAACGGAATAATTATTTGCTGCGAGCCAGAATGTCTCCATATTCAGTCAGTCTTGTCCTCCATCACCTACGGTTTGTCCTTACTCCTTACCGTTCCTTACTTTAGAGGCCATGTATTATATAAGAGTATTATGGACACTGATTATAAACATGACCTTGAGATATATGCCActggagtctctctctctctctcttgtccaTCTCCTTTCTCCGTCTCGCCCAACTGTCATCCTGTCTAGCCTTGTTAAGAAAGACTAAACTTGCTCCTGGCCACAA
>TU341934
AGGggttatattcattttaattaattcagcTAGCTACAAAATGTCAACCACGTCACAGACTGACAGGATACAGAGGGAGTTTTTAATATTACATGCATTGAGGACACCAGTCTCACAGTTTAACCTATGTGTCATTCAGGTAAGGTATTTATTTGTCTTCTTATACAGACTATTCAACATCGTAGCAATTTGGTGTGCATAGCTCTAAAGTACAGAAGCAacaaaaacccttttttttttgtcatggattattttctttttctttttttttaaaccagtaaCAAACCACACAGGGAAAGTAAACTAACAGGATACAGTCTTCTTATAAAAGTAAGATCTCTCAGAAATatgcatctttgctttacattgcaaatgtttgtttatttatttttttctcagagcATCCAAAACCTATGATACAGAAAACAACTAGTCTCCACCATTCAGCACTTCAGTCATTATCTTTTCCAGGCTGCATAATCATTTAGAAAACAGGTCATTTTTGCAGAACCACCACTTTTGTCATGTCTGTTACAGTTCTTCTTTCGGTCATGTTGCATTATGTTACATCGATGGTCACagtctgtaaatatatattgaCAGAAAGAGAGCACTATTGCAAACTTGCAGGAATATGGAACGTTCAACTGTGTCCTAATACTGAGCATGCTTTGTCAATTTTTGCTActgccatgatttttttttatatttttaagacaagttttatttataagacTCTAAAATCTACTATTCATCATGCATAATGCACAATTCACACCACTTGGAATGCAATGTCTATTACAGCTACAGAATCTAGTTGCACTTTGTCTAAACAGTAACTGATTATGTTTGTGATGAGGAAAATGAACCAAGGAAGGATACTGTAAGTGCTTTTGTATCATCATCATATAATTAATCATCTTTTACCCATTCATCATTTGCCATGACAACATCAAAATAAGGAGCATGACAGTAGCCTAATGAAATGACACAGTTTTACTAAGacgatactgagatactgaaaAGGAAAGACAGTTTGTAGAGCATTCCTATTATATATTTCATCCAGTAAAGAgatttatatcatatataatatatatgtgacaaaaaaagaataaaaacttcACAAGTGAGCTAGAGCCATCGAGCCAGCACTATATACAACCTTTGGAAAGAATGATACAGAGTATAAGAAATCATTTTACGAGGACTATCATTGAAAAAGCCGACAGACAGCACACAGAACAACATTTACAATGTAGGGGtgatatgtgcatgtgtgcaaacCTAGAAGGTAAATACCAAGATAAAAGCATGTTTGCGCCTTTTGACAAACTGCATGGTTAGTAAAAGCAGGCATTTCAGACGCTTAACCGCTGCCAAGCATCTTTGTGGCCCTCTGGTTAGCTTCATCAATCCTGGTCTTGTTGGACTCAGCCTGagagacaaCTTGTCCATGATCCTGTCAATTTGGCGATTCTGAGTATCAATCTCATTACCCATGTCAAGGGCCATGTGGCGCAGGTTACCAATGATGCCTCCCACCTGCTCCAAGTTCTCATCCATCTCATTTTCCCGGGCATCATCTGTTACCCTGAACAGACAATCACATACAGGACAGGACATGAGTACATTATAGGAGTATTTCATGGCTCTAGGCTCCCCGATTCAAATTTGAGCTTGGGTTAGGtctttcgcatgttctccccatgtcaaagtgggtttcttctgggtgcTCTGGTTCCCTCCTACATCATCAagacatgccagtaggtggattggtgactctaaattgtccataggcatgaatgagtgtgcataagtgtgtgtgggatggactggcgtcccaccCTGGGTATGTCCCCGTCaacgctgaccaggataaagtggttactgaagatgaatgagtacTTGTTCTGAGCACGCACACTATTATTTACTCACAGCAGACTAAGTTAGCCTCACCCctagctatatacagtatatcaactGGCCTTATCAAAGCTGTCTCAGCGGTATAGCTGTCTTAACCATCCCTGTGTGCCCCCTCTGGACAAATCCAGTTCTCATCCAAAGTAGCCTCACCTGCGGATGAAACCTCCGCTGATGGCCATCTGTTCCCGCTCATCAACCACACGGGCAGGCTGGCTGTTCACGACACCATCCTGGTTGTTGCCCCAGGCCTTGCTGCCTCCACTCTTCATTCTGCATGAATCATGAAGAACATAAGCGCCAAGGTGGCCTGAGAGCCTCCATATGACCAgtgtttccacccacacacactagcaACAGTGGACAAATGCTGGACTAACAGGCAGGCAGTAACAGGCATAACCAAATCAGTTCTAGCTGAAATGTTAGGCCTTGCTGACATATAACATACATGGCTTGTTGGCTAAAACACATACCTTTGTTTAACAGATGAAAAAACAAGGGGAAACTAGCTAGCAACAGAAATCTGGGACTCAGAGGTCATCAGTGCATTACTTCTTGTTGGACTGCTTCCCCTTCCCAGTGATAATGGCTTGTTTCCCTATCTCTaattataacaaataacaaagaaGACAGGCCATGGCAGACAGACAACACAGAATAACAGGACTGCCACACTGTCAGAGACAAGTGCAAAcaactgcaaaagaaaagaaactggaGGGACGAGAACCCATTCCTAGGCCACCATTTTAATTTGGGCTTCACTGGTAAAATGTTTTCGCCTTGTTTACAGTAGTGATATTTATGGTTGGTGATTATTATAACGTTGACCATTTTAGCTCGGCATATAACAGGGAACGAACTAATTATATTAAGTTTTGTCTCTACGGTATGATTAGTATAGTATTAGATGCCACAAATCCTTCAGAAAATTTACACTGATTGAGAATGATCAAATTTAGATCACCTAAACTTTGTTTACTCTCGTTCTGTTCCATCCGTTATATGAACATCTGTCATCCTCCTAAAGTGCAATCTAGTTTAGCATCGTTTGTCTAAAATGAGCCAGAACATTTATCTCTGGGATTGTTCACATGGATAAATACTGTTATCAGGGATCCAGATCTTGAAGCTAAGCTGAGAAAAAGCTAGACTGCCCACTGCAGCGTTATTTATATTCTCCACCATCTAACTATCTTGGCAGTGTGTTtagctttatttaatgttgcagGCTAGTGGA

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU341932 True 5981 lncRNA 0.38 3 2506569 2515375
TU341934 False 3175 lncRNA 0.40 3 2506569 2510414

Neighbor

gene id symbol gene type direction distance location
kif26bb kif26bb,LOC108257734,LOC108257735,LOC108439847,LOC107698359,LOC107719102,LOC107553492,LOC107696093 coding upstream 31966 2454793 ~ 2474603 (+)
lft1 lft1,LOC108257744,LOC107732386,LOC107698358 coding upstream 67529 2436698 ~ 2439040 (+)
fzd3a fzd3 coding upstream 151971 2336070 ~ 2354598 (+)
tdrd6 NA coding upstream 294368 2189759 ~ 2212201 (+)
pla2g7 pla2g7,LOC108440964,LOC102291497,LOC107553425 coding upstream 325413 2162431 ~ 2181156 (+)
stmn4 stmn4,LOC108257558,LOC108439832,LOC107696168,LOC107698365,LOC107599074 coding downstream 96826 2612201 ~ 2618880 (+)
paqr8 LOC100304624 coding downstream 124905 2640280 ~ 2644268 (+)
LOC113546789 NA coding downstream 130698 2646073 ~ 2654271 (+)
znf395b znf395 coding downstream 141394 2656769 ~ 2664965 (+)
si:ch211-63o20.7 LOC108258100,LOC108439852 coding downstream 168998 2684373 ~ 2702470 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding upstream 53195 2448422 ~ 2453374 (+)
G288512 NA non-coding upstream 180280 2325658 ~ 2326289 (+)
G288461 SF3B6,sf3b6,pm14 non-coding upstream 287931 2215577 ~ 2218638 (+)
LOC117599781 NA non-coding upstream 355331 2147215 ~ 2151238 (+)
G288225 NA non-coding upstream 432688 2026869 ~ 2073881 (+)
G288734 NA non-coding downstream 65934 2581309 ~ 2608373 (+)
G288740 NA non-coding downstream 112383 2627758 ~ 2628318 (+)
G288789 NA non-coding downstream 248895 2764270 ~ 2765055 (+)
G288834 NA non-coding downstream 354221 2869596 ~ 2916810 (+)
G288836 NA non-coding downstream 354987 2870362 ~ 2870666 (+)
cnstb LOC108257742 other upstream 10517 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 364388 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 485306 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1146453 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1241937 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1428119 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1472677 3988052 ~ 3988123 (+)
G289531 NA other downstream 1539082 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1732955 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1813457 4328832 ~ 4338299 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G342759 NA non-coding NC_048568.1 CM023222.3 31491472 ~ 31505602 (-)
striped catfish (Pangasianodon hypophthalmus) G174181 tradd,LOC107674458,LOC107750529,LOC107700380,LOC107594616 non-coding NC_047605.1 CM018551.1 1009778 ~ 1010691 (-)
tiger barb (Puntius tetrazona) G139590 NA non-coding NC_056718.1 CM032087.1 17888568 ~ 18180187 (-)