G288789


Basic Information

Item Value
gene id G288789
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2764270 ~ 2765055 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU342050
tagctCAGCGAAACAGCTGACTAAATATTTGATGACTGATTATTCTGGTTAAATATTGACCAACTTCTCTATGAGGGGAAAAAGATACCTTTAATCTATAGCCCAGTTCTGTTGAAATTCCTATTGACCACCAAGAGTTCATCTTCTCTTATTGATCGAgtacacactcctatacactgCGTGTCTATGCACACAGTGAAGATGGATTGAGAAACCGCTGCAGACTGATGAGACGAGTCAGTGCAATGTGCCTTCAGGCTCTGTGATCTTTCCACTAAGCATCAACCCTCTGACATAACCAGGCATTATGTAAAGAAGGAGTGACACACTGCTGAACACATAATGCAGTGTGTCACTGTACCCATAACCAGCTGAGAATGCGAATGAAACGAGCCGAGCAAGTGAAAAGAACTTGTAGTATGAGTTTATACTGCATTGAGTTTTGTTACTGAACTTAGGAAAGTCAATATTTTAACTGCTGAAAGCAAATCCATTCAAAAGCAATGTCAATTTCAGCGTGTACATTTTGCTtgagaacaaaacaaatcatACTCATGGATTAAAATATAGTTTGAATTttggcagtaaaaaaaaaaaacaccacagaagTCAGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU342050 True 614 lncRNA 0.39 2 2764270 2765055

Neighbor

gene id symbol gene type direction distance location
slc25a24 slc25a24,LOC108439838,LOC104935995,LOC107732372 coding upstream 17206 2726388 ~ 2747064 (+)
si:ch211-63o20.7 LOC108258100,LOC108439852 coding upstream 61800 2684373 ~ 2702470 (+)
znf395b znf395 coding upstream 99305 2656769 ~ 2664965 (+)
LOC113546789 NA coding upstream 109999 2646073 ~ 2654271 (+)
paqr8 LOC100304624 coding upstream 120002 2640280 ~ 2644268 (+)
kifap3a kifap3,kifap3a coding downstream 137038 2902093 ~ 2926230 (+)
niban1a LOC108258050 coding downstream 166299 2931354 ~ 2949577 (+)
grcc10 c25h12orf57,clg18h12orf57,cssa15h12orf57,grcc10,c7h12orf57,LOC103027128,LOC107695984,LOC105901913,LOC102299093,LOC107105086 coding downstream 186716 2951771 ~ 2955866 (+)
cbr4 cbr4,LOC107597475,LOC107665353 coding downstream 202146 2967201 ~ 2976245 (+)
anapc4 anapc4,LOC107683992,LOC107665412 coding downstream 319594 3084649 ~ 3100761 (+)
G288740 NA non-coding upstream 135952 2627758 ~ 2628318 (+)
G288734 NA non-coding upstream 155897 2581309 ~ 2608373 (+)
G288694 NA non-coding upstream 248895 2506569 ~ 2515375 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding upstream 310896 2448422 ~ 2453374 (+)
G288512 NA non-coding upstream 437981 2325658 ~ 2326289 (+)
G288834 NA non-coding downstream 104541 2869596 ~ 2916810 (+)
G288836 NA non-coding downstream 105307 2870362 ~ 2870666 (+)
G288839 NA non-coding downstream 213278 2978333 ~ 2980205 (+)
G288927 NA non-coding downstream 427052 3192107 ~ 3193930 (+)
G289121 NA non-coding downstream 514351 3279406 ~ 3288541 (+)
cnstb LOC108257742 other upstream 268218 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 622089 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 743007 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1404154 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1499638 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1178439 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1222997 3988052 ~ 3988123 (+)
G289531 NA other downstream 1289402 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1483275 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1563777 4328832 ~ 4338299 (+)

Expression


Co-expression Network