G288834


Basic Information

Item Value
gene id G288834
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2869596 ~ 2916810 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU342114
ctctgtggggatttgtgatcattcagctacaagagcattagtgagatcaggcactgatgttggtgaggaggtctggggttcagtcggtgttccagttcatcccaaaggtgttcagtggggttgaggtcagggctctgtgcaggacactcgagttcttccactccaaccttcacacaccatgtcttcatggagctcgctttgtgcacaggggcatcgtcatgctggaacaggtttgagcctctcagttccagtgaagggaagtcATAAAGCTTAAAGACTTTCTAGACAATTCTGCACTTCCAGCTTTgagacaacagtttggggaagagccacatgtgggtgtgatggtcagctgtccacatacttttggccatcaAGTGTAAGTCAGGTCctaatttttttcagtacagaTCTATAGTAAAGACAGGACAACAGAATAACATGTACATGAATGAGATGTGTAATTAATGCTTCTATGTGTGTGCCAGTCCCAAAGGTGAATAGTTATGAAACCTTTAAACGGCGTGTAGCTGTTTTTCCATCACACTGTGGTTGATTAGTCCTTCTAGTACTGTAGAATTTTTATGAGTCAGGTCAGGGAAGGGGCTCTTAAAGGActgctacagaaacagctgcaAGTCCTACAGTACAAGACATTGTAAATCTCTAATGACCTCTTATTGTTTTTTCAACCCTGCTAACCCCTGCACAATTTTAGTAGAGCGTTGAATAATGTAATAGCTAGCAAAAtagctagcaaaaaaaaaaaagtacagcatTAGCATACATCAAACACCTCAGTCCACCGGCTGACCGAACAGACTCTGTCTGTGTCCGGCTCTTAATCTAACCACTTCCTGAGGAGAAATATCGCGTGTGATTGGTGCCTGATCCATATACCCAGGCGTAGTTGCCTTTGGCACCATTGATGTGTCGTTTTAAGGGTCCTGGGGGTGTCCTATGTCCcacataattaatataatatacttgTTAAAATAACACACTCGCTCCTAAAGTAAATGTTGTTCTTCCAGGACGGGGGATGTCCAGTGTTAGCTACCTGTGGAGATCCGTAAGCACACGCGATCACTCACACTCAGAAGAGCTTCCTGTAGCTAAAGGTCTATTCATCCAGCCAAGGCCCTTGTGTTTAAATTTCAGAAaagaatgtgagtgtgtgaatatgaaaGTCGAGGAATGTATGCGTGTTGTCCTAAACTTACATCTGGCACTCGGGCTGACGAATATAATTAACTGAGATGAACTCATCTCATCTCTTATCTATTCTGCGTTGGCCTGGTAGAGTGAGAAGTCCACAAATCCCAGCAGCCCACACCGAAGGTCACAACCCTGGCGATAAGATAAAAAGCACGGCTCAGCCTCCTCTCAtcactgctgtctgtgtgttatCTCTTAGCTGAGAGGAGGAGGTAACAGTAATCCACTTTACCAAGCATATTTTGTACTCTGCAGTGTTTATCAATGCAGCACCTTTTCGAAGCATGCAATTGACTCTGAATTTCAGGACAGGGAAAAGGGAAGGAGGTCAGTGATCACTCACCTTTTAACTCATTTTTCAAATCAAAGACGAACACAACAGGTCGAAATACC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU342114 True 1611 lncRNA 0.44 2 2869596 2916810

Neighbor

gene id symbol gene type direction distance location
slc25a24 slc25a24,LOC108439838,LOC104935995,LOC107732372 coding upstream 122532 2726388 ~ 2747064 (+)
si:ch211-63o20.7 LOC108258100,LOC108439852 coding upstream 167126 2684373 ~ 2702470 (+)
znf395b znf395 coding upstream 204631 2656769 ~ 2664965 (+)
LOC113546789 NA coding upstream 215325 2646073 ~ 2654271 (+)
paqr8 LOC100304624 coding upstream 225328 2640280 ~ 2644268 (+)
niban1a LOC108258050 coding downstream 14544 2931354 ~ 2949577 (+)
grcc10 c25h12orf57,clg18h12orf57,cssa15h12orf57,grcc10,c7h12orf57,LOC103027128,LOC107695984,LOC105901913,LOC102299093,LOC107105086 coding downstream 34961 2951771 ~ 2955866 (+)
cbr4 cbr4,LOC107597475,LOC107665353 coding downstream 50391 2967201 ~ 2976245 (+)
anapc4 anapc4,LOC107683992,LOC107665412 coding downstream 167839 3084649 ~ 3100761 (+)
slain2 slain2 coding downstream 184584 3101394 ~ 3128120 (+)
G288789 NA non-coding upstream 104541 2764270 ~ 2765055 (+)
G288740 NA non-coding upstream 241278 2627758 ~ 2628318 (+)
G288734 NA non-coding upstream 261223 2581309 ~ 2608373 (+)
G288694 NA non-coding upstream 354221 2506569 ~ 2515375 (+)
G288581 hnrnpu,LOC107732397,LOC107719095,LOC107553490,LOC107696185 non-coding upstream 416222 2448422 ~ 2453374 (+)
G288839 NA non-coding downstream 61523 2978333 ~ 2980205 (+)
G288927 NA non-coding downstream 275297 3192107 ~ 3193930 (+)
G289121 NA non-coding downstream 362596 3279406 ~ 3288541 (+)
G289134 NA non-coding downstream 424591 3341401 ~ 3343744 (+)
LOC113546783 NA non-coding downstream 447418 3364228 ~ 3368671 (+)
cnstb LOC108257742 other upstream 373544 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 727415 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 848333 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1509480 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1604964 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 1026684 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1071242 3988052 ~ 3988123 (+)
G289531 NA other downstream 1137647 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1331520 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1412022 4328832 ~ 4338299 (+)

Expression


Co-expression Network