G288839


Basic Information

Item Value
gene id G288839
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 2978333 ~ 2980205 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU342119
TTtccagagatttttatttatattgttcaTAAACCAAAACAGTCAGAAGAACATTTCATATACAGGCATGTCAGCTTGGAACTAAACGAACAAAATCTTTCATCAGTTCTTAAGTATGTATTGTGTTGAGACAGAACTaacagcaaaaggaaaaaaaaaaaaaaaaagacaaaagctaTTGAAAGGAGTTGAGTGAGTACATATGAAGAAGTCATATGTCTAGCTATATTTCTGCAAGCTTTACGTTTGTGCAATCCAGCTACCCTTGACTCTAGTTGACTAAGATATTGTAATGTAATACAAGTACCAGAgttgaatatgtgtgtatatatatatatatattaatacgAAGGAAAAAGATAAGTGTAAATAATTCGAATGGTGgtaaatatatagttaaataaAGACTGGGCATAAAGCCATGAGAAAATCactaatataatttaatgtcTGCATCTGGCTATAAATATTCCACTTCACTGTTTTCCCTCTTCCTCGTATGAAAAAGTACACAGTCGTGTTTAAGTGGTGAATACACTTCTGCCGTTGCTAAAaacttgtgcatgtgtgtttgtatgaacAGAAAACAACTTTAGCATTATCATATCCACTGCATCAGTATCACTGGTGTCGCTAATTTCTATCATGTAAATTCTTTcgaacaatcttttttttttctgaccgcACATTCACTCTCCATTTAAAGTGACAGTGTAATCTCTCCACAGCCAATGCACGTCATGTTCTCCTCAGCTAGTATTCCCGCACCAAACTGCCCTCTCGCCTAGGATACCTCCACCTGCCTGTCACTCTCGTCTACGAAAACACAGAGCAAGGATGTCATTCTGAAAATCATTCAATCTCATAACCCAGTTCAGAACCTGTAACAACTTTCCTATGCCCAAACACAAgatagagaaagacaaaaacaataataataataataataataaggccCGGCCTTGTGCAATATCTATGGCGTCCAGACATGGTGGATATCTGTGGTAGTGTTATCAGTCTATCTACACCCAGACTGCTGTGGTTCACATAAAAAGAAGTTCACTACAAAAAGGGAACGCCACTAATAGAAACCTAACTATTAGACCTATCCAACTCCGAATGTGCTCAGAGTTCTCTAGAAACACCGCTCCATTACCCATAAGTCTTTCTGCTACAGATCTCCAGCAACTCAAATAGAGACTAAGGCACTGAGTATTAAGTACTACACACTGGCACCATAGTAACACATGCACAActagatgtttttatttaaaatgaatcgATTTTTGCATTAAGCATTTTGAATTGGTTAATCATCTCTCAGGCACTATGTAGATATGGCAGAAAAGGTGATCATTGGTATAGTACCTCCTTCCTCAAATCAGCTTGACATGAatttgtgggtgtgtatgtgcagtCTGAAAGAAACTGGATATGACCTCACTTCACTATCACACTTCCTCACTTCCCATCTTCTCACATGGACCAAAATCAAATCTTCCAAATTTGCAATGAACTGGAATCtctctgtgaaaaaaatgatttttttttttttttttttttaattttctgatttatttttcttcggcTTAGCTTCAAACAGCACTCTCCACCAGGGTGCCAGGGGGCAGGGGGCTGGAGTCTGGGAAGAAAGCTGCCTTCACATCCAGACCGCGCTCGGTCAGTGCGGCGTAGCGGCTGGTCGAAGGACGCACCTTCTTGGGCTTTGGGGTGTGTGTCTGCTGATATTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU342119 True 1752 lncRNA 0.38 2 2978333 2980205

Neighbor

gene id symbol gene type direction distance location
cbr4 cbr4,LOC107597475,LOC107665353 coding upstream 2088 2967201 ~ 2976245 (+)
grcc10 c25h12orf57,clg18h12orf57,cssa15h12orf57,grcc10,c7h12orf57,LOC103027128,LOC107695984,LOC105901913,LOC102299093,LOC107105086 coding upstream 22467 2951771 ~ 2955866 (+)
niban1a LOC108258050 coding upstream 28756 2931354 ~ 2949577 (+)
kifap3a kifap3,kifap3a coding upstream 52103 2902093 ~ 2926230 (+)
slc25a24 slc25a24,LOC108439838,LOC104935995,LOC107732372 coding upstream 231269 2726388 ~ 2747064 (+)
anapc4 anapc4,LOC107683992,LOC107665412 coding downstream 104444 3084649 ~ 3100761 (+)
slain2 slain2 coding downstream 121189 3101394 ~ 3128120 (+)
slc10a4 slc10a4 coding downstream 155528 3135733 ~ 3141717 (+)
zar1 zar1 coding downstream 162678 3142883 ~ 3144734 (+)
ociad2 NA coding downstream 277968 3258173 ~ 3262050 (+)
G288834 NA non-coding upstream 61523 2869596 ~ 2916810 (+)
G288836 NA non-coding upstream 107667 2870362 ~ 2870666 (+)
G288789 NA non-coding upstream 213278 2764270 ~ 2765055 (+)
G288740 NA non-coding upstream 350015 2627758 ~ 2628318 (+)
G288734 NA non-coding upstream 369960 2581309 ~ 2608373 (+)
G288927 NA non-coding downstream 211902 3192107 ~ 3193930 (+)
G289121 NA non-coding downstream 299201 3279406 ~ 3288541 (+)
G289134 NA non-coding downstream 361196 3341401 ~ 3343744 (+)
LOC113546783 NA non-coding downstream 384023 3364228 ~ 3368671 (+)
G289145 NA non-coding downstream 384033 3364238 ~ 3369854 (+)
cnstb LOC108257742 other upstream 482281 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 836152 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 957070 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1618217 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1713701 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 963289 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 1007847 3988052 ~ 3988123 (+)
G289531 NA other downstream 1074252 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1268125 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1348627 4328832 ~ 4338299 (+)

Expression


Co-expression Network