G288927


Basic Information

Item Value
gene id G288927
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3192107 ~ 3193930 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU342216
GCTTCTACCCACCACTGATGACAACCCTGCTTTAAACATTGAATCTACAGATTGATTTCATGCACAAAATAAGAAACAGTCAGATTGGATCAGAAAGTTTGGATTACAGGAGCGACAGAAGACGCCTCATACAACGGAAGCAAAGCTGAAAAGCTCGGATTAAATGCTAATTGAAACCAGTAAATCCCAGGGAATCACCAAGAATCAAATGGGAAAATCACACTGAATTACAAGCACATGATCACAACATCAACTTTAAAATCAGGGAatcattgggggaaaaaaaatcaattcctGCACTACATCACCAGGaggaaaaaagcaagaaaaagatctgacactTCATAACGGATCAAATATCTATTAAGCAGCCTACTCAATTTTCAGCTCtgggtcacacacacaagcatgtgCACATACCTACACATGCGCATTATATTAACACGTACATGAATTAAGGCATCGATACAAAAAAGGTGAGTTAGTATTATTGATACACAAGTACTTACGgtaatgtattattaatggAATTgattcttttaaacatttacaagcagtaaacactaaacactacactgTTATTGCCCTGCAGACATGAAACAACCCAGGACTCCACTTTCTAATGGGCCAATAACTAAAATTAACCTGCGCAGACCTGAAGAGAAATACTGTGTAGTCCTGAGTGGAAGTGGAGGGTAAAAACGCAGTACAATCTCACaaataactcaataataaaGGTAGAAACTGCaatctgtgtgtatatgcggTTTATGGGAAAAgactgctgctgtgtgtgtgtgtgttttgttttgttcttaatcttataatataaaatactagATAGccatcattttttgcagtgaaccAATAAAACTAGATAAACCTTTGAGACTGTGTTTAAGTTTTGAAACATTATGCTATGTTAACCTGAGAATATGACTGAGTGAAAACTAGCACACAGGAGTTTTACTGTAGTGGTTATGTTGTACCTTTAGGTGTGAGAGGCAGTTCTGCAGGAAGATGTGCCAGTTATTGAGGAAAAATTGCTTTTGACTGACACACAGCAAACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU342216 True 1071 lncRNA 0.37 2 3192107 3193930

Neighbor

gene id symbol gene type direction distance location
zar1 zar1 coding upstream 47373 3142883 ~ 3144734 (+)
slc10a4 slc10a4 coding upstream 50390 3135733 ~ 3141717 (+)
slain2 slain2 coding upstream 63987 3101394 ~ 3128120 (+)
anapc4 anapc4,LOC107683992,LOC107665412 coding upstream 91346 3084649 ~ 3100761 (+)
cbr4 cbr4,LOC107597475,LOC107665353 coding upstream 215862 2967201 ~ 2976245 (+)
ociad2 NA coding downstream 64243 3258173 ~ 3262050 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding downstream 70017 3263947 ~ 3277968 (+)
spata18 spata18,LOC107683994,LOC107718421,LOC107601933 coding downstream 111123 3305053 ~ 3314463 (+)
rasl11b rasl11b coding downstream 205185 3399115 ~ 3402675 (+)
fip1l1a LOC108257999 coding downstream 360807 3554737 ~ 3585005 (+)
G288839 NA non-coding upstream 211902 2978333 ~ 2980205 (+)
G288834 NA non-coding upstream 275297 2869596 ~ 2916810 (+)
G288836 NA non-coding upstream 321441 2870362 ~ 2870666 (+)
G288789 NA non-coding upstream 427052 2764270 ~ 2765055 (+)
G288740 NA non-coding upstream 563789 2627758 ~ 2628318 (+)
G289121 NA non-coding downstream 85476 3279406 ~ 3288541 (+)
G289134 NA non-coding downstream 147471 3341401 ~ 3343744 (+)
LOC113546783 NA non-coding downstream 170298 3364228 ~ 3368671 (+)
G289145 NA non-coding downstream 170308 3364238 ~ 3369854 (+)
LOC113546887 NA non-coding downstream 171348 3365278 ~ 3365402 (+)
cnstb LOC108257742 other upstream 696055 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1049926 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1170844 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1831991 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 1927475 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 749564 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 794122 3988052 ~ 3988123 (+)
G289531 NA other downstream 860527 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 1054400 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 1134902 4328832 ~ 4338299 (+)

Expression


Co-expression Network