G289134


Basic Information

Item Value
gene id G289134
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3341401 ~ 3343744 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU342480
aaaacacacacagacaaatcaAGGTGCAAATCAGGAATTATTAATTATACCACAAGTCTGACATTACTGTCCTTGGTTTAACAAAAAGCACATGAGCATGGAAAGGAATGTTAATCTTTTCCCTATACTTCTACCTTGTTGAGCTCACGTCATTATACACAGTCAAATTCAGTCAGAGATAAGCTTGTCATGCAAAATATTTCTCTCCATCAACTAGGCCTTCAATTGTTTTCTCTCTAAAGCCATAGACTCTCCTCATGAATACACATCAgaaaattcctttaaaaaatgcCCTTCATATTCTCTAATTAGATAAATTGTGCATTTCTACTTGAGGGTCCATAGCAGCCATCATGAGTACGTTGAACTGAACTCATTACAAGATCTTGATGCAGTCTGTTAATGCTGAACTAGGATCAGCTTCTGAAACCGTTCCCTTAGTGTTAATCATTGCAGAGAAACAgaactgatctcagatcagcctTAAAAAGTAccaaatacagatattattattattattaTTATTGAAATTAGTACAACTGCTTCAACTGGCCTAAGACAGTGAAACCACTGGACCTATGCAGAGATCTGGGGTCATAGTAGCTCAGAGTCAGAGCTTTAAACAGACTTTCCTCTGTATAAGAGGGAAACGTTAATATGAATGCAGGGAAAAGGTGATCAGTGCTTCAGATACTATAAGCATCAGCATATATATCGCTACATTTACTACATCTTTAACCTGTAAGCAGACTTCTATGCGTAATTCAAATCTGAATTGAACTAGTTTCCTCTGAAACATGGAGCACAATGGCGGTTGGATAACAGCTGTGTTACGTACGGAAAAGATGAAGCAATAACAGAGCTATAGCCTTGAATCCTGGCTCCATAGGAGGATCATTGTGTGTTTAAACGTAACTTTCAACGGATGAAGGTCTTTCTGCCTGTCATAGTCTACTGCTGATGTAAGGCAGGAAGGACTTTGTTGACCTGAGATATCCATGGCCTGGTGACTATCATGCAAATTTAGATAGAGAGTATAGCAGCAATGGCCCATTTTCTCTCAGGGAGGTGTCAATTAGGGCTTAATGCCAGAATATAATCAGACTGGACTAGACAATTGTCTTAAATATAGCTGAACATACTTAAAACCTTTACCTTTGTCCTGGTCCAGACAAATGCACTCACCAGACACTGTATCTGAAACACTCCCCGTTAATTTCTCTTATTCCTATAATGCTCCACGATGCAGCGACTGCACGGATGGTATCTAAACCACTATAGCAAACTGAGTTTCTTTGCTTTGGTAAAATAAAAAGCTCATGATTTCTTAGTTAGCCAGATAACTTAAGCCAAAAGTCCTAACTGTCCAATAGGATAAGAGGTaacaaacattcattcattgttgGCTTCATTTAGATAATTCACTGGAAAATTCTTTGTGAGAAATCAGATATTGAGGACTGAACATACACATATAATACATGaatgtataaattaaaatatcctGTTCATACACACATCTGTGCCAGGGAAACCACactgagaagagaagagaagaaccCTAAAATGTTGCAAAAACTGAAGGCCTCTCTCTGAATGAGGACTCAGATCTGGGAGTGGACGATTCCCAAAGTTCCCGACGACTAGATGCTGATATTATAGTGATTCGATTCCTTCCTTTCAAGGTCTTGACAAGAGTGATGTCATTCAATATGTTgttcttttgctgtttttgtagTGTTTGTCACTATGTATTTTGATGCTTTTTGTTCGTAAAGTGCCTTCCATATGCAGGTGACTGACTGAGGGTCAGTTCTGATGCATCCCCCCACCCTCACCCCCACCCCAACACACAGTCCCCCCCCTCAGAGTGCAGTGATGATGTGGAGGAGGGGATTCTGGGAAATGTAGTATTGGCAAAAATGAGGTCAGGGTGCTATTGGCACAGCTTTCAGAAATTACTcctgagtgtgagagtgtgagtgtgtgagagtgggctGTGGACTGCTTGGTGTTAGTGATTGAACTACATTTCTTCTGTTTGTTCTGTCCCCTAATTTCCATCCTTTGCTCTTTTTTGCTCTTTATTCATCGTCTGATCCTGTCACTCTCTGGACTGATAAAAAAGGATGTATCCTGACTCAGAGTTCTTCGAGATGTCAGAAGTCAAACCATAGAACTCCTCTATTGCCTGTGCATCAATTTTCTGTGTgggagaaagca

Function

NR:

description
PREDICTED: uncharacterized protein LOC106605384, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU342480 True 2223 lncRNA 0.40 2 3341401 3343744

Neighbor

gene id symbol gene type direction distance location
spata18 spata18,LOC107683994,LOC107718421,LOC107601933 coding upstream 26938 3305053 ~ 3314463 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 63433 3263947 ~ 3277968 (+)
ociad2 NA coding upstream 79351 3258173 ~ 3262050 (+)
zar1 zar1 coding upstream 196667 3142883 ~ 3144734 (+)
slc10a4 slc10a4 coding upstream 199684 3135733 ~ 3141717 (+)
rasl11b rasl11b coding downstream 55371 3399115 ~ 3402675 (+)
fip1l1a LOC108257999 coding downstream 210993 3554737 ~ 3585005 (+)
gsx2 gsx2 coding downstream 374362 3718106 ~ 3720488 (+)
pdgfra pdgfra coding downstream 387898 3731642 ~ 3753431 (+)
kita kit coding downstream 437646 3781390 ~ 3808749 (+)
G289121 NA non-coding upstream 52860 3279406 ~ 3288541 (+)
G288927 NA non-coding upstream 147471 3192107 ~ 3193930 (+)
G288839 NA non-coding upstream 361196 2978333 ~ 2980205 (+)
G288834 NA non-coding upstream 424591 2869596 ~ 2916810 (+)
G288836 NA non-coding upstream 470735 2870362 ~ 2870666 (+)
LOC113546783 NA non-coding downstream 20484 3364228 ~ 3368671 (+)
G289145 NA non-coding downstream 20494 3364238 ~ 3369854 (+)
LOC113546887 NA non-coding downstream 21534 3365278 ~ 3365402 (+)
LOC113546886 NA non-coding downstream 23904 3367648 ~ 3367772 (+)
G289164 NA non-coding downstream 39933 3383677 ~ 3383882 (+)
cnstb LOC108257742 other upstream 845349 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1199220 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1320138 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 1981285 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 2076769 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 599750 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 644308 3988052 ~ 3988123 (+)
G289531 NA other downstream 710713 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 904586 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 985088 4328832 ~ 4338299 (+)

Expression


Co-expression Network