G289164


Basic Information

Item Value
gene id G289164
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3383677 ~ 3383882 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU342523
actgattctcaagaaggcaacacgatatATTAAGGGGGTGTAGCTTCGGAAGGGCaacactaaatgaaaaaaaaacaaaaaacaaaaacttaatGTATCGTGCTACCTTCTTTAGCATCAcggaatgtttgcaccttttgtaatagttgtgtacgagtccctcagctgtcctcagtacgaaaagatggatctcaacatcatatagc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU342523 True 206 lncRNA 0.39 1 3383677 3383882

Neighbor

gene id symbol gene type direction distance location
spata18 spata18,LOC107683994,LOC107718421,LOC107601933 coding upstream 69214 3305053 ~ 3314463 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 105709 3263947 ~ 3277968 (+)
ociad2 NA coding upstream 121627 3258173 ~ 3262050 (+)
zar1 zar1 coding upstream 238943 3142883 ~ 3144734 (+)
slc10a4 slc10a4 coding upstream 241960 3135733 ~ 3141717 (+)
rasl11b rasl11b coding downstream 15233 3399115 ~ 3402675 (+)
fip1l1a LOC108257999 coding downstream 170855 3554737 ~ 3585005 (+)
gsx2 gsx2 coding downstream 334224 3718106 ~ 3720488 (+)
pdgfra pdgfra coding downstream 347760 3731642 ~ 3753431 (+)
kita kit coding downstream 397508 3781390 ~ 3808749 (+)
G289145 NA non-coding upstream 13823 3364238 ~ 3369854 (+)
LOC113546783 NA non-coding upstream 15006 3364228 ~ 3368671 (+)
LOC113546886 NA non-coding upstream 15905 3367648 ~ 3367772 (+)
LOC113546887 NA non-coding upstream 18275 3365278 ~ 3365402 (+)
G289134 NA non-coding upstream 39933 3341401 ~ 3343744 (+)
G289240 NA non-coding downstream 110069 3493951 ~ 3494334 (+)
G289351 NA non-coding downstream 239182 3623064 ~ 3687916 (+)
G289363 NA non-coding downstream 326819 3710701 ~ 3739214 (+)
G289378 kdr,LOC107675844,LOC107578973 non-coding downstream 459233 3843115 ~ 3844679 (+)
G289515 NA non-coding downstream 558392 3942274 ~ 3974015 (+)
cnstb LOC108257742 other upstream 887625 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1241496 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1362414 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 2023561 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 2119045 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 559612 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 604170 3988052 ~ 3988123 (+)
G289531 NA other downstream 670575 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 864448 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 944950 4328832 ~ 4338299 (+)

Expression


Co-expression Network