XLOC_005262 (si:dkey-239j18.3)


Basic Information

Item Value
gene id XLOC_005262
gene name si:dkey-239j18.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 16634442 ~ 16636627 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00010120
agtctttCAGGCAGGATGATGTTTGCTTTGCTCGTCACGCTTAGCATAAGTGCAGTGTTTGCTGCTTCATCTATAGACATCCAGTTAGATGACCACTGGAACTCCTGGAAGAGCCAGCATGGAAAAAGCTATCATGAGGATGTAGAGGTCGGGAGGAGAATGATTTGGGAGGAGAACTTGAGAAAAATTGAGCAACACAACTTTGAGTATTCCTATGGAAATCACACCTTTAAAATGGGAATGAATCAATTTGGTGACATGACAAATGAGGAGTTCAGACAGGCAATGAATGGTTATAAGCATGACCCCAACCAGACATCACAGGGCCCGTTGTTCATGGAACCCAGCTTTTTTGCAGCCCCACAACAGGTTGACTGGAGACAGAGGGGCTATGTTACTCCTGTCAAAGACCAGAAACAATGTGGATCTTGCTGGTCTTTCAGTTCAACGGGTGCCTTGGAAGGTCAGCTCTTCCGTAAAACTGGAAAGCTGATTTCTATGAGTGAGCAAAACTTGGTGGACTGTTCCAGACCACAGGGCAATCAAGGGTGTAATGGAGGCCTCATGGACCAGGCCTTCCAGTATGTTAAAGAAAACAAGGGGCTGGATTCTGAGCAGTCATACCCTTATCTTGCAAGGGATGATCTGCCATGCCGGTATGACCCCCGTTTTAATGTCGCTAAAATCACCGGATTCGTGGACATTCCCAGCGGTAATGAGCTTGCCCTAATGAATGCTGTTGCAGCTGTGGGTCCTGTATCTGTTGCTATTGACGCATCACATCAATCCCTACAGTTCTATCAGTCTGGCATCTATTATGAGAGAGCATGTAGCAGTAGTCGACTTGATCATGCAGTCTTGGTGGTTGGCTATGGTTATCAGGGTGCTGATGTTGCTGGGAATAGATACTGGATTGTGAAGAACAGCTGGTCTGACAAATGGGGTGACAAAGGCTACATCTACAtggcaaaagacaaaaacaatcaCTGTGGCGTTGCGACAAAGGCCAGCTATCCCCTAATGTAAGGCCACTGGAGCCTTCTCTGCATTCTGAAAAAGTCCCGTTTATGGTTTctctattttaatgtgtttttatttcttctaTTTTATCAAGTTTTTCTGCTGTTAGTGCTATGATAGTGGTATTTTA

Function

symbol description
si:dkey-239j18.3 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to human CTSL (cathepsin L) and CTSV (cathepsin V).

GO:

id name namespace
GO:0006955 immune response biological_process
GO:0006508 proteolysis biological_process
GO:0051603 proteolysis involved in cellular protein catabolic process biological_process
GO:0005764 lysosome cellular_component
GO:0005615 extracellular space cellular_component
GO:0004197 cysteine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-121214-39 Predicted to enable cysteine-type endopeptidase activity. Predicted to be involved in immune response and proteolysis involved in cellular protein catabolic process. Predicted to act upstream of or within proteolysis. Predicted to be active in extracellular space and lysosome. Human ortholog(s) of this gene implicated in hypertrophic cardiomyopathy. Orthologous to human CTSL (cathepsin L) and CTSV (cathepsin V).

Ensembl:

ensembl_id ENSDARG00000089806

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00010120 True 1150 mRNA 0.45 7 16634442 16636627

Neighbor

gene id symbol gene type direction distance location
XLOC_005261 ctslb coding downstream 14685 16617138 ~ 16619757 (-)
XLOC_005260 BX465840.1 coding downstream 35585 16598743 ~ 16598857 (-)
XLOC_005259 si:dkey-239j18.2 coding downstream 39036 16592408 ~ 16595406 (-)
XLOC_005258 FO704724.2 coding downstream 62133 16572195 ~ 16572309 (-)
XLOC_005257 si:dkey-269i1.4 coding downstream 76336 16555603 ~ 16558106 (-)
XLOC_005263 BX465840.2 coding upstream 18054 16654681 ~ 16654795 (-)
XLOC_005264 ctslb coding upstream 54957 16691584 ~ 16720434 (-)
XLOC_005265 BX322603.1 coding upstream 106425 16743052 ~ 16746547 (-)
XLOC_005266 zgc:174154 coding upstream 122345 16758972 ~ 16764751 (-)
XLOC_005267 si:dkey-269i1.4 coding upstream 238018 16874645 ~ 16877136 (-)
XLOC_005255 CABZ01044816.1 non-coding downstream 140974 16493352 ~ 16493468 (-)
XLOC_005250 NA non-coding downstream 774573 15857732 ~ 15859869 (-)
XLOC_005247 NA non-coding downstream 1184184 15445574 ~ 15450258 (-)
XLOC_005269 BX000534.2 non-coding upstream 265018 16901645 ~ 16901759 (-)
XLOC_005272 NA non-coding upstream 305577 16942204 ~ 16943248 (-)
XLOC_005273 NA non-coding upstream 328029 16964656 ~ 16966808 (-)

Expression


Co-expression Network