G289351


Basic Information

Item Value
gene id G289351
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3623064 ~ 3687916 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU342751
TCCCttgcttctttttctctgctCAGGTGCAAAGCTGTACcctttcctccttctcctccctcCAGTCCTCTTTGGTACCCtttcccttcctttcttttcttttcctctgcctctctttttcctctcttttgtCCCTATTTCTCAGCCATCGCCACGGCAGTGTGACAGCGAACACGGAGTCAAACGGATGGAGAAGAGGGAAGCGAGAAGGAGAAGCAGAAGTAGCAGCAGGAGAGACAGCTGTggtggaggagaagaaaaagagggatGAGGTAAAATCAGGAGAGGAGACAGATCGTTAGTTCACAGCCAGCACGCTTCTTGGATGCGATGGCTGTCTAATCTGGTCTGGCATCTTCCAAGAGTAAGAGGATTTGCACTTCTGCccgctgatgtgtgtgtgtgtgtgtgtgtGTGAGAGGGAGAG

Function

GO: NA

KEGG:

id description
ko04721 Synaptic vesicle cycle

RNA

RNA id representative length rna type GC content exon number start site end site
TU342751 True 427 lncRNA 0.51 2 3623064 3687916

Neighbor

gene id symbol gene type direction distance location
fip1l1a LOC108257999 coding upstream 38059 3554737 ~ 3585005 (+)
rasl11b rasl11b coding upstream 220389 3399115 ~ 3402675 (+)
spata18 spata18,LOC107683994,LOC107718421,LOC107601933 coding upstream 308601 3305053 ~ 3314463 (+)
dcun1d4 dcun1d4,LOC107755250,LOC107597444 coding upstream 345096 3263947 ~ 3277968 (+)
ociad2 NA coding upstream 361014 3258173 ~ 3262050 (+)
gsx2 gsx2 coding downstream 30190 3718106 ~ 3720488 (+)
pdgfra pdgfra coding downstream 43726 3731642 ~ 3753431 (+)
kita kit coding downstream 93474 3781390 ~ 3808749 (+)
LOC117599795 LOC107568747 coding downstream 190906 3878822 ~ 3885661 (+)
mgst3a mgst3 coding downstream 209099 3897015 ~ 3901866 (+)
G289240 NA non-coding upstream 128730 3493951 ~ 3494334 (+)
G289164 NA non-coding upstream 239182 3383677 ~ 3383882 (+)
G289145 NA non-coding upstream 253210 3364238 ~ 3369854 (+)
LOC113546783 NA non-coding upstream 254393 3364228 ~ 3368671 (+)
G289363 NA non-coding downstream 22785 3710701 ~ 3739214 (+)
G289378 kdr,LOC107675844,LOC107578973 non-coding downstream 155199 3843115 ~ 3844679 (+)
G289515 NA non-coding downstream 254358 3942274 ~ 3974015 (+)
G289517 NA non-coding downstream 260280 3948196 ~ 3948458 (+)
G289522 NA non-coding downstream 296831 3984747 ~ 4350564 (+)
cnstb LOC108257742 other upstream 1127012 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1480883 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1601801 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 2262948 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 2358432 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 255578 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 300136 3988052 ~ 3988123 (+)
G289531 NA other downstream 366541 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 560414 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 640916 4328832 ~ 4338299 (+)

Expression


Co-expression Network