G289378 (kdr,LOC107675844,LOC107578973)


Basic Information

Item Value
gene id G289378
gene name kdr,LOC107675844,LOC107578973
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 3843115 ~ 3844679 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU342784
cacacatgcacacacacataaacacacacacacatacagtacattagaaaATAACTTTGAGCGCATTGTCTCTTCAAGGTCATTGCAAAACAGATACAGGAAGAGAGGAGTCTCATAACCTGAttcacacacccaaacactggcgtgcacacacacacgcacacacacacacacacacacacacacacacacacacacacggtcctTTATACTCTGCCTTTAAAATTTTTCAAAAGAGATGTAACTGAAGATAACAAATTCTGACAACTACATTTAGTAGAAATATTTTcgataaaagtttattttagaaAACTAGTTATGTTTAGGAcaagtttaataaaatacatcGTTCTTACGTAACCTACATTAAGGTCCTCCCTTAATAACCTGTACATTCAGGAAGCAAaccttgaaaaatgaaaagcataATGTAAAGAAGGACAAGAGGCAAGGAAAAGAACATTCGAGAGACATTGTTGCTCGTGATTTGATAAGATGCTGGCCAAATGTCAGaggaaaacaatacaaaacataaatacagacaaaaaaaaacattaggtcACTCAGAAAGTGACCAGAAAGTGGGTGTATCTTTTTACAGGAAGTGGGAGTGGTCTCAGTGAGCAGCTACTCTTGCTCTGCAGTCTGTGTAAACAATGATTACATTTCCAAAGCTTTCTCCAAAAAGTGTGACctttaaatcaattaaaatgaatgcatttaCAGCAAAGCAGACACATACAGCTTATCTGCACCcacaaaatatattacatttttttttttttttattgaagggAGGAAATAAAATAGACATGGTCATTTGTGTGATAAATTAGAACTCTGCATGAGTGTTTCACATGCATAAATTGCAAGATAAATAGAAATGAATTGTAGGTTTCAGCTAAGGCACAGTGGTCAGTTGAATGCTATATGTTATGTGTGTTATACTCAGTGATTATAATTTCAAATCTCAACATACAGTTACAGGCATGTGCATGCAGCACTTTAGTGTTAAGGAGATTTACTGACTTTAATAAATGTACCTGActaaatcatattaaataaaaactatagaGAAAACTATAATGCCACTGATCAAGAGAATGTGAGGAGAGCTGTGCTTAAATCAAATAACTGCTTTGTAGCATGGACTAGAATCTCTGGCTAAGCACCAACCTATCATAAGCAGAACCTTGTCTGTTTTTTATTGCTTTCGGTGAAAACGGGTGAGTCTGCTATTCCAGGCCGAAAGTTAAGAAAGACCAACACTTTGTATAGTCATATAGTTGTGGGTTTATGGGTGGTTCCTATTAAACAGGGGGAGTACTATAGCGGACCTCAGTGCTAAACTTGTCATCCCTCTTGGGGAATGGTGGCTTCTTCAAAATGTCCCTCTTCAGGATCATCTCTTCATTGGCATACACAGGCGCCTCTGTGTCATCCGAGTGGTAGCCCGACTGGTAGCCACTGGTCTGATTGGATGATTCAGATGCCACAGATTCCTTACTCTTACATCGTAGCAGGGGGCTGAGGGAAGAATTAAAG

Function

symbol description
kdr Predicted to enable transmembrane receptor protein tyrosine kinase activity. Acts upstream of or within angiogenesis. Predicted to be located in endoplasmic reticulum. Predicted to be part of receptor complex. Predicted to be integral component of plasma membrane. Is expressed in several structures, including axis; endocardium; intermediate cell mass of mesoderm; tail bud; and vasculature. Human ortholog(s) of this gene implicated in several diseases, including adhesions of uterus; artery disease (multiple); gastrointestinal system cancer (multiple); macular degeneration (multiple); and pancreatic cancer (multiple). Orthologous to human KDR (kinase insert domain receptor).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU342784 True 1545 lncRNA 0.38 2 3843115 3844679

Neighbor

gene id symbol gene type direction distance location
kita kit coding upstream 34366 3781390 ~ 3808749 (+)
pdgfra pdgfra coding upstream 89684 3731642 ~ 3753431 (+)
gsx2 gsx2 coding upstream 122627 3718106 ~ 3720488 (+)
fip1l1a LOC108257999 coding upstream 258110 3554737 ~ 3585005 (+)
rasl11b rasl11b coding upstream 440440 3399115 ~ 3402675 (+)
LOC117599795 LOC107568747 coding downstream 34143 3878822 ~ 3885661 (+)
mgst3a mgst3 coding downstream 52336 3897015 ~ 3901866 (+)
LOC113546823 LOC108257899 coding downstream 61015 3905694 ~ 3917080 (+)
pfas pfas,LOC107665308,LOC107556148,LOC107593806,LOC107737373,LOC107737297 coding downstream 146988 3991667 ~ 4016550 (+)
hook1 hook1 coding downstream 180003 4024682 ~ 4045273 (+)
G289363 NA non-coding upstream 103901 3710701 ~ 3739214 (+)
G289351 NA non-coding upstream 155199 3623064 ~ 3687916 (+)
G289240 NA non-coding upstream 348781 3493951 ~ 3494334 (+)
G289164 NA non-coding upstream 459233 3383677 ~ 3383882 (+)
LOC113546886 NA non-coding upstream 475343 3367648 ~ 3367772 (+)
G289515 NA non-coding downstream 97595 3942274 ~ 3974015 (+)
G289517 NA non-coding downstream 103517 3948196 ~ 3948458 (+)
G289522 NA non-coding downstream 140068 3984747 ~ 4350564 (+)
G289533 NA non-coding downstream 202530 4047209 ~ 4055985 (+)
G289532 NA non-coding downstream 216065 4060744 ~ 4066425 (+)
cnstb LOC108257742 other upstream 1347063 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1700934 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 1821852 1996120 ~ 2021263 (+)
srp9 srp9,LOC107553440,LOC107601484 other upstream 2482999 1358186 ~ 1360116 (+)
LOC117599677 NA other upstream 2578483 1259176 ~ 1264632 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other downstream 98815 3943494 ~ 3982694 (+)
trnad-guc_14 NA other downstream 143373 3988052 ~ 3988123 (+)
G289531 NA other downstream 209778 4054457 ~ 4070367 (+)
clocka clock,LOC107701480 other downstream 403651 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 484153 4328832 ~ 4338299 (+)

Expression


Co-expression Network