G289521


Basic Information

Item Value
gene id G289521
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4345579 ~ 4363088 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU342943
gtttttGCCCCCTTAGTCCCAGCGAAGTGAATTATTCTTATAATACTACAGCATTCAAATACATCCTACATAAATTctgacatcctgtacaattgtgtgcttccaactttgaggcaacagtttggggaagaagcacatatgggcgtGTGATGGTCTggcgtccacaaacttttggccatctAGTGTATATTGGGGATATCAGcctgtgtattaatgtgtaaatgtgttgtgATGATGAGTTGTAGTAGAGGTAGAGTAAGGTGAGAAAAGCAGTGTTTCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTATACTAACGAGGAGTTGCCCTAAAACACTACCAAGCGCACTTCCAAGTCCACTACAGTTAAGTATTGTAACAATACCTAATTTGTGTCGGTGTTATGGCAGTGAGACAGTTTTAGTCCCAGTCACTTTCCATATCAGTGAGATGAGACACAGGCGCTCATAAGGATACATTAATCTAAACAGACAGTAAAAACTCACCACTAAAACCGCAACCATCCAGCAAAATAAACCCTATACCTCCCGtttctacataaataaaagcttCACCACGCGGTAAAGCCTCCAAAAatttttcatccattcattttcccGCTTATCCTACGAGATTCAATAACGAGCTCCAGGTGGGAAGAGCGGCGCCTCATCGGGAATATGTTTGCACTCGACGGTAAGTTCAACATTATAACGGTTTGcacttataaaaaataaaacaagacaaaaagcaTACAGTGCAGCAATATCTAGTGATACATCATGCTATAGAAACAAAGCAAATACttcaaataatataatatatatgaacttacagttacagcaaaGCATCATGGGGAAGACAGTCAGTGGCAATATTTACTTCCGGGTTTCGGCGGTCAGTGCTGCTGGTTTCTGCATCATTACAGCAGGAGGAAGGTTGTGGATCTTACACTGTAGCCGATAAAGGTGcagaaaatgtatatattaactTACTGTACGAAATGCAAATGGTCTAAGAGCATTTTTAAACAGGGCATTTCAAATATTTGACGGATATTTGACTTATTTTGCTTTACGTGTCCTTTTAAACTaaattttgaagtgaaaagcagctgcaAAGAAAACATTAGCAAAGTCTGGCAGGATTTCAACCCCTAAAGCATGCAACtcgaaataaaataaaaataataaacaaacgactaattaagctaattaataaaactatacaatTTACCGAGTAACAGAGTCGTGTCactatgtatacatatatatatacacacactaaatttatatactatataaaacATATAGGTTTGATTATAATCATGTATTACTTGTTGGATGGTTTTGGAGCACATGAGACTCAATGAAGACcagcctttttctcttttcttcaagTTTCCACGCAgatgtaaaataataacaataataatgataataataataataataatgatgatgatgataataataataaagatcaGTTTAACTGTATATAAGCTCTGACTAACCAACTCAGGTAACTATCAGATTTCCTGAAATATGACAAGCAGTTTGAGATTAAAATATCTCCAACTCGACAAGGCATTAATCAGCTTATGACTagaaaaagatttaataataCACCAGAATTTCCACTTTGTCCGAAATCCACTGTATAAtcttattaattataaaatcagATCACACTTCTCTTAACTGCAATTCAATTTTCACTAGACAAAAGTTTTGAAGAGTTAAAGACAGTATATAAACCTCAGTTTCACTGATAGAAACCCAAATATCAGACATTTCATTCTTTTGTAAACTTATTCACACCTCATTGAGAtcagaaaatctgtttatacaATCAACACAAACTACAACTGAAGAACAGCCTGCAACCGTAATAAACACCAAAACTTCTCCTTCCCggaatatttgtaataatttgcTCTTTTTAGACTATCTGCTCAGCCCCACCACGCAGTGGAGCCTCcaaaaattattcattcattcatcttcccgCTTTATCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU342943 True 2045 lncRNA 0.36 3 4345579 4363088

Neighbor

gene id symbol gene type direction distance location
trnad-guc_19 NA coding upstream 7605 4337903 ~ 4337974 (+)
trnad-guc_18 NA coding upstream 11950 4333558 ~ 4333629 (+)
trnad-guc_16 NA coding upstream 18037 4327471 ~ 4327542 (+)
nmu NA coding upstream 106658 4235827 ~ 4238921 (+)
cep135 cep135 coding upstream 149139 4176531 ~ 4196440 (+)
LOC113545323 LOC108258072,LOC107721804,LOC107581484,LOC107597850,LOC108414547,LOC107712838,LOC107658162 coding downstream 3677 4366765 ~ 4396120 (+)
LOC113545214 LOC108257527 coding downstream 44680 4407768 ~ 4419833 (+)
echdc2 echdc2,LOC107669145 coding downstream 62546 4425634 ~ 4432355 (+)
LOC113545289 LOC108258110,LOC108414737,LOC103029237,LOC107658161,LOC107721808,LOC107597864,LOC107669143 coding downstream 84559 4447647 ~ 4450922 (+)
ralgps2 ralgps2,LOC107739854,LOC107712857 coding downstream 90228 4453316 ~ 4557487 (+)
G289615 NA non-coding upstream 10620 4265383 ~ 4334959 (+)
G289619 NA non-coding upstream 15307 4319461 ~ 4330272 (+)
LOC117599777 NA non-coding upstream 101628 4239026 ~ 4243951 (+)
G289530 LOC108257764 non-coding upstream 271613 4061818 ~ 4073966 (+)
G289532 NA non-coding upstream 279154 4060744 ~ 4066425 (+)
G289831 NA non-coding downstream 70147 4433235 ~ 4434790 (+)
G289866 angptl1,angptl1a non-coding downstream 166840 4529928 ~ 4539840 (+)
LOC117599674 NA non-coding downstream 261054 4624142 ~ 4627837 (+)
LOC113545162 NA non-coding downstream 341574 4704662 ~ 4798444 (+)
G289989 NA non-coding downstream 367997 4731085 ~ 4731312 (+)
trnad-guc_17 NA other upstream 7280 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 35650 4248330 ~ 4309929 (+)
G289531 NA other upstream 275212 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 357456 3988052 ~ 3988123 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other upstream 362885 3943494 ~ 3982694 (+)
LOC113545190 NA other downstream 237967 4601055 ~ 4609601 (+)
dnm3a dnm3,dnm3a other downstream 578863 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 1372385 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1772832 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2649654 7012742 ~ 7019686 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G939478 NA non-coding NC_048575.1 CM023229.2 7689851 ~ 7690206 (+)