G289530 (LOC108257764)


Basic Information

Item Value
gene id G289530
gene name LOC108257764
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4061818 ~ 4073966 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU342957
cgttcatatattttacacattttctataCATGTATTACAAAACATGTAAGTTCTTTCATTTCTGGCTATAATtggtaagaaaataaaaatatagttgTTCTACTCAAGACTTtctaatgattaaaaacaaacaaacagacaaacaaagaaaatgtcaaaatggtCTTTTTAGCCTACCTTGTCTATTGTTTTGAAGTTAAGCTCAGTGAAAATGTTTCCCACAAAAGGTAGGggccatggtcctggaggaaaaTTGGATGGATTTTTATTCCTGATGATATCAAGAAGtagcaggaaaagaaaaaatcctATAAGCCAGCTCTTAAAATCAAGGTATTCCACTAAATTGTATAaaaacattgctgtggtatgtcTGCTCCTGTATGCGAAGGTTTGTGTACTTTGTGTCCTCTTGAACTGTGCCAAACTGTAGCAGAGGGAAGAGATTATATAAGCCGATCTGAAATCCTAGATAtgcttaacaaaaaaaaaaacaaaagtttcctcttcactgtgttttttccccacttcctTTACTGCTAGGCTTCTTACACAGTatttacacccacacacacacacacagaaaccactttattaggaacactagactaatactgggtagggtctccctttgctctcagaacagcctcaataCTTCATGTCATGGATTCCACAAGTTGTCataaacattcctttgagattctggtccatgttgacatgattgtattacataattgctgcagatgtG
>TU342961
TGAATAATAACTTTCGGAGTGGCCACTTACCCTTTTCTGCTTTGAAAGCTTCACACAGAAAGATGCTCTCCTGCTGGATACTCAGCTCTAAGGCCTTCCTCCCTTCACCAAAGTGGCGTAGGTGTGTGACGATAAACTTCCTCTGGTTTTTCCACAGGTACCCATTACTGAGAGCTACACCTTCAGAGCATGGCACAGCAAGCCTCAGttagattatatttatattaaaaaaagattagatgtaatgcatgtaaaatatttcatacagtACCAATCTTGAGTATTAGAAATGCTTGAATGCTATTTAGTTTCTTTATtatagctcttgggtttttcaaCATGACATGTTGGGTTAAATAAACAACCCATTTTGCTAGGCTAAATTAAtccagtgtgtgttatattcAATAGTTGCCCAGccacatggttaaaaaaaaaaacaacaaaacaactcatattgtatttttttaacccAGACATTTTTGGAGTGTACAAACTTTATGATATATATATCAAACACCCATTAGGTCATCAAagtactgttcttttttttaaaggaaattatCAGGATAATTTGGTATCAAAGACAATCATTTGtaataatgctgaaaaaaatacagtatttattaactGAGAAAAGTACATGCCCCACcccatatattattattattttacttgcCTAGTCCCTTAAAGATTTTGTGAAAGAGAGGGACAACAGGACGGTCTGCAAAGCTGTCCAGCTGAGTAACGAGAGCCTCCTTCACCATTTTATGTCCAGAGATAAACACAGTTTTCTCACTGCCCCAGCGCAGGCTGAAAACATCTCCGTACTTCTCAGCAAGCTTAGTTTAAATACATACAAGTAATGGAGAAAAGAGTGAAAGGTAGTGGTacagtgaaaaataataaaaaggaaaaaaaaaattaaaagattttgAACCGTtcatatattttacacattttctataCATGTATTACAAAACATGTAAGTTCTTTCATTTCTGGCTATAATtggtaagaaaataaaaatatagttgTTCTACTCAAGACTTtctaatgattaaaaacaaacaaacaaacaaacaaagaaaatgtcaaaatggtCTTTTAGCCTACCTTGTCTATTGTTTTGAAGTTAAGCTCAGTGAAAATGTTTCCCACAAAAGGTAGGggccatggtcctggaggaaaaTTGGATGGATTTTTATTCCTGATGATATCAAGAAGtagcaggaaaagaaaaaatcctATAAGCCAGCTCTTAAAATCAAGGTATTCCACTAAATTGTATAaaaacattgctgtggtatgtcTGCTCCTGTATGCGAAGGTTTGTGTACTTTGTGTCCTCTTGAACTGTGCCAAACTGTAGCAGAGGGAAGAGATTATATAAGCCGATCTGAAATCCTAGATAtgcttaacaaaaaaaaaaacaaaagtttcctcttcactgtgttttttccccacttcctTTACTGCTAGGCTTCTTACACAGTatttacacccacacacacacacacagaaaccactttattaggaacactagactaatactgggtagggtctccctttgctctcagaacagcctcaataCTTCATGTCATGGATTCCACAAGTTGTCataaacattcctttgagattctggtccatgttgacatgattgtattacataattgctgcagatgtG
>TU342963
cgttcatatattttacacattttctataCATGTATTACAAAACATGTAAGTTCTTTCATTTCTGGCTATAATtggtaagaaaataaaaatatagttgTTCTACTCAAGACTTtctaatgattaaaaacaaacaaacagacaaacaaagaaaatgtcaaaatggtCTTTTTAGCCTACCTTGTCTATTGTTTTGAAGTTAAGCTCAGTGAAAATGTTTCCCACAAAAGGTAGGggccatggtcctggaggaaaaTTGGATGGATTTTTATTCCTGATGATATCAAGAAGtagcaggaaaagaaaaaatcctATAAGCCAGCTCTTAAAATCAAGGTATTCCACTAAATTGTATAaaaacattgctgtggtatgtcTGCTCCTGTATGCGAAGGTTTGTGTACTTTGTGTCCTCTTGAACTGTGCCAAACTGTAGCAGAGGGAAGAGATTATATAAGCCGATCTGAAATCCTAGATAtgcttaacaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU342957 False 748 lncRNA 0.36 3 4062764 4073966
TU342961 True 1687 lncRNA 0.35 3 4061818 4073966
TU342963 False 489 lncRNA 0.33 2 4062764 4068040

Neighbor

gene id symbol gene type direction distance location
hook1 hook1 coding upstream 16545 4024682 ~ 4045273 (+)
pfas pfas,LOC107665308,LOC107556148,LOC107593806,LOC107737373,LOC107737297 coding upstream 45268 3991667 ~ 4016550 (+)
LOC113546823 LOC108257899 coding upstream 144738 3905694 ~ 3917080 (+)
mgst3a mgst3 coding upstream 159952 3897015 ~ 3901866 (+)
LOC117599795 LOC107568747 coding upstream 176157 3878822 ~ 3885661 (+)
ppat ppat,LOC107683925,LOC107721366,LOC107737308,LOC107556156 coding downstream 27703 4101669 ~ 4115455 (+)
aasdh aasdh coding downstream 50092 4124058 ~ 4137561 (+)
cep135 cep135 coding downstream 102565 4176531 ~ 4196440 (+)
nmu NA coding downstream 161861 4235827 ~ 4238921 (+)
trnad-guc_16 NA coding downstream 253505 4327471 ~ 4327542 (+)
G289533 NA non-coding upstream 5833 4047209 ~ 4055985 (+)
G289515 NA non-coding upstream 87803 3942274 ~ 3974015 (+)
G289517 NA non-coding upstream 113360 3948196 ~ 3948458 (+)
G289378 kdr,LOC107675844,LOC107578973 non-coding upstream 217139 3843115 ~ 3844679 (+)
G289363 NA non-coding upstream 322604 3710701 ~ 3739214 (+)
LOC117599777 NA non-coding downstream 165060 4239026 ~ 4243951 (+)
G289615 NA non-coding downstream 191417 4265383 ~ 4334959 (+)
G289619 NA non-coding downstream 245495 4319461 ~ 4330272 (+)
G289521 NA non-coding downstream 271613 4345579 ~ 4363088 (+)
LOC117599675 LOC107732010 non-coding downstream 276782 4350748 ~ 4352801 (+)
trnad-guc_14 NA other upstream 73695 3988052 ~ 3988123 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other upstream 79124 3943494 ~ 3982694 (+)
cnstb LOC108257742 other upstream 1565766 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1919637 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 2040555 1996120 ~ 2021263 (+)
clocka clock,LOC107701480 other downstream 174364 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 254866 4328832 ~ 4338299 (+)
LOC113545190 NA other downstream 527089 4601055 ~ 4609601 (+)
dnm3a dnm3,dnm3a other downstream 867985 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 1661507 5735473 ~ 5801693 (+)

Expression


Co-expression Network