G289531


Basic Information

Item Value
gene id G289531
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4054457 ~ 4070367 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU342965
ATATTAGAGGaaaatttaatctcatcatccaagaaactgaatctggggagaagatggacatttcaacaagacaacaaccccaaacatacagccaaatcAACTCAACTGGTTtctaaaaagaagaagaaggtgctTGCATGGCCTAGACAATCTCCTGACTTTATTTAAgaaggattttgaaattgtgagtCCATCAGTGGGACCCTTGTAACCTGAAGGTTTGAAGACAATTTGTGGAATGGCCAAAATtaaaccacaatgctgcaaaaagctgATTACTTCTTACTATAAAtgtctcaaagctgtaattgccaaATATGGCTTTGCAACAAACTTTGTTTATATCTTTGtgtatgcttatgaatacatattttcatataagtacaaagtcaaaagccattatgtgtgtaaatatgaagtAGATACAAGTATATTGTATAACAAAAACGTAAATATTTCCCCTCACAGTAAAGGGAGAATTATAGGGTGGCTAAAACCGAATCATGTCAAACAATATGTTGTGCATTGTAGTTATTCTGTACTATAATGCTGCtagaaaccaaaataaaattaatcatgCTTGTTCATTCCTACTTAAAAAAGAAGTTAGCTGTTGGGAGAGATCATAGGGGCAAGATAAAGTTTCTCACAACAGCTAGCTTAAAacgtatatatgtgtgtatgggCTCTTAGCGTGGTGTCACACACATGCGGTAGGGTCTGGGTGAATACGTGAAGCCCATCTGGCCCTCCAAGCTCAGCTCTTCTCCAGGACAAGGGGAGAATGTAAAGCACTGGAACAGAGAGGTGAAGAACAGGAAGAGCTCCATACGAGCCAGCTGCTCCCCCAGACATACTCTCCTAC
>TU342966
CTTTGTTAcgtggtgcattatcatgctggaagtagctaTTATAAGACGGTAAATTGTGGCAATtgtccaaattaggcccaaatttgacccgatggtggcgctagagaGTTGGCAACACTTCGCCCAAATTttgtcagaatgttccttagaccctccccagtcagtgtgccaaatttcacaacttttttcCAGACATTTCTATGGGGCTGCCCtaggcagaagaagaagattaaaaaaaaaattaaataaaaattattttattttatttcattttattttgttttatatagtgTTTCCCCCCCAGGGTGAAGTGCagaggtgggagcatcatgatattgGGCATTGCATGATATGGGGCACTGCAAACGGTACTGAAGCATTACATGTCATCAGAGTAAAAATGAATGGAGCGACACACCAGGAGATATTAGAGGaaaatttaatctcatcatccaagaaactgaatctggggagaagatggacatttcaacaagacaacaaccccaaacatacagccaaatcAACTCAACTGGTTtctaaaaagaagaagaagaaggtgctTGCATGGCCTAGACAATCTCCTGACTTTATTTAAgaaggattttgaaattgtgagtCCATCAGTGGGACCCTTGTAACCTGAAGGTTTGAAGACAATTTGTGGAATGGCCAAAATtaaaccacaatgctgcaaaaagctgATTACTTCTTACTATAAAtgtctcaaagctgtaattgccaaATATGGCTTTGCAACAAACTTTGTTTATATCTTTGtgtatgcttatgaatacatattttcatataagtacaaagtcaaaagccattatgtgtgtaaatatgaagtAGATACAAGTATATTGTATAACAAAAACGTAAATACTTCCACTCACAGTAAAGGGAGAATTATAGGGTGGCTAAAACCGAATCATGTCAAACAATATGTTGTGCATTGTAGTTATTCTGTACTATAATGCTgctagaaaataaaaataaaattaatcatgCTTGTTCATTCCTACTTAAAAAAGAAGTTAGCTGTTGGGAGAGATCATAGGGGTCAAGATAAGGTTTCTCACAACAGCTAGCTTAAAacgtatatatgtgtgtatgggCTCTTAGCGTGGTGTCACACACATGCGGTAGGGTCTGGGTGAATACGTGAAGCCCATCTGGCCCTCCAAGCTCAGCTCTTCTCCAGGACAAGGGGAGAATGTAAAGCACTGGAACAGAGAGGTGAAGAACAGGAAGAGCTCCATACGAGCCAGCTGCTCCCCCAGACATACTCTCCTAC
>TU342967
ATATTAGAGGaaaatttaatctcatcatccaagaaactgaatctggggagaagatggacatttcaacaagacaacaaccccaaacatacagccaaatcAACTCAACTGGTTtctaaaaagaagaagaagaaggtgctTGCATGGCCTAGACAATCTCCTGACTTTATTTAAgaaggattttgaaattgtgagtCCATCAGTGGGACCCTTGTAACCTGAAGGTTTGAAGACAATTTGTGGAATGGCCAAAATtaaaccacaatgctgcaaaaagctgATTACTTCTTACTATAAAtgtctcaaagctgtaattgccaaATATGGCTTTGCAACAAACTTTGTTTATATCTTTGtgtatgcttatgaatacatatatttcatatcagtacaaagtcaaaagccattatgtgtgtaaatatgaagtAGATACAAGTATATTGtataacaaaaatgtaaatattcccCTCACAGTAAAGGGAGAATTATAGGGTGGCTAAAACCGAATCATGTCAAACAATATATTGTGCATTGTAGTTATTCTGTACTATAATgctgctagaaaaaaaaaaattaatcatgctTGTTCATTCCTACTTAAAAAAGAAGTTAGCTGTTGGGACAGATCATAGGGGTCAAGATAAAGTTTCTCACAACAGCTAgcttaaaatgtatatatctGTGTATGGGCTCTTAGCGTGGTGTCACACACATGCGGTAGGGTCTGGGTGAATACGTGAAGCCCATCTGGCCCTCCAAGCTCAGCTCTTCTCCAGGACAAGGGGAGAATGTAAAGCACTGGAACAGAGAGGTGAAGAACAGGAAGAGCTCCATACGAGCCAGCTGCTCCCCCAGACATACTCTCCTACCTGCATAACGGATAAATGAGACGTCTTGTGTTTTAAATATCACTATTAACTGTTATTCTTTGTTTGTATTATCCATTTGTCAGACATCTATACAGCATTGCATATTTGCTTTACCTGCTGAAAAGGGCAGGAAAGCATCTTTCTTCAGGAACTGGCCTTGATCATCCAGAAAGTGTCCTGGGTTAAACGTGTCTGGTGTTTCCCACTCGTTCTTGTCATTAAGCACAGATGACAGATTTGTAGTCACAGCTGTACCCTAATGACgtgagaggaaaaaacatcACTTGTTAAATTGTATTTGTGTATAcataattatgattttatttggtGATTAAGGTCAAACCTTTGGTATGAAGAATCCACCCAGGACAGTATCTTTACAGGCCATCTTGGGGAAACCCAGAGGCACAATGTTGCCCACCCTTTGAATCTCATGAATAACAGCTTCAGTGTAGGGCATGTTGGGTTTGTCGGCCATGCTGGCCTGGCGTGACTGTCCAATCACTTTGTCTATCTCTGCCTGCACCTTTTCTGGAAAAATAAGACAATAGTCCTAATTTAAAACATAGCTGTGCAGCAAATTGAATGTAGGACTGTATCTAGTTTTCAGACTCAACAGACTCTTTCTCCATGTTCATCTGTAAGTACTGAC
>TU342971
ATATTAGAGGaaaatttaatctcatcatccaagaaactgaatctggggagaagatggacatttcaacaagacaacaaccccaaacatacagccaaatcAACTCAACTGGTTtctaaaaagaagaagaagaaggtgctTGCATGGCCTAGACAATCTCCTGACTTTATTTAAgaaggattttgaaattgtgagtCCATCAGTGGGACCCTTGTAACCTGAAGGTTTGAAGACAATTTGTGGAATGGCCAAAATtaaaccacaatgctgcaaaaagctgATTACTTCTTACTATAAAtgtctcaaagctgtaattgccaaATATGGCTTTGCAACAAACTTTGTTTATATCTTTGtgtatgcttatgaatacatatatttcatatcagtacaaagtcaaaagccattatgtgtgtaaatatgaagtAGATACAAGTATATTGtataacaaaaatgtaaatattcccCTCACAGTAAAGGGAGAATTATAGGGTGGCTAAAACCGAATCATGTCAAACAATATGTTGTGCATTGTAGTTATTCTGTACTATAATGCTgctagaaaaaaaattaatcatgCTTGTTCATTCCTACTTAAAAAAGAAGTTAGCTGTTGGGAGAGATCATAGGGGCAAGATAAAGTTTCTCACAACAGCTAGCTTAAAacgtatatatgtgtgtatgggCTCTTAGCGTGGTGTCACACACATGCGGTAGGGTCTGGGTGAATACGTGAAGCCCATCTGGCCCTCCAAGCTCAGCTCTTCTCCAGGACAAGGGGAGAATGTAAAGCACTGGAACAGAGAGGTGAAGAACAGGAAGAGCTCCATACGAGCCAGCTGCTCCCCCAGACATACTCTCCTAC
>TU342972
ATATTAGAGGaaaatttaatctcatcatccaagaaactgaatctggggagaagatggacatttcaacaagacaacaaccccaaacatacagccaaatcAACTCAACTGGTTtctaaaaagaagaagaagaagaaggtgctTGCATGGCCTAGACAATCTCCTGACTTTATTTAAgaaggattttgaaattgtgagtCCATCAGTGGGACCCTTGTAACCTGAAGGTTTGAAGACAATTTGTGGAATGGCCAAAATtaaaccacaatgctgcaaaaagctgATTACTTCTTACTATAAAtgtctcaaagctgtaattgccaaATATGGCTTTGCAACAAACTTTGTTTATATCTTTGtgtatgcttatgaatacatattttcatataagtacaaagtcaaaagccattatgtgtgtaaatatgaagtAGATACAAGTATATTGTATAACAAAAACGTAAATACTTCCACTCACAGTAAAGGGAGAATTATAGGGTGGCTAAAACCGAATCATGTCAAACAATATGTTGTGCATTGTAGTTATTCTGTACTATAATGCTgctagaaaataaaaataaaattaatcatgCTTGTTCATTCCTACTTAAAAAAGAAGTTAGCTGTTGGGAGAGATCATAGGGGTCAAGATAAAGTTTCTCACAACAGCTAGCTTAAAacgtatatatgtgtgtatgggCTCTTAGCGTGGTGTCACACACATGCGGTAGGGTCTGGGTGAATACGTGAAGCCCATCTGGCCCTCCAAGCTCAGCTCTTCTCCAGGACAAGGGGAGAATGTAAAGCACTGGAACAGAGAGGTGAAGAACAGGAAGAGCTCCATACGAGCCAGCTGCTCCCCCAGACATACTCTCCTAC
>TU342973
ATATTAGAGGaaaatttaatctcatcatccaagaaactgaatctggggagaagatggacatttcaacaagacaacaaccccaaacatacagccaaatcAACTCAACTGGTTtctaaaaagaagaagaagaaggtgctTGCATGGCCTAGACAATCTCCTGACTTTATTTAAgaaggattttgaaattgtgagtCCATCAGTGGGACCCTTGTAACCTGAAGGTTTGAAGACAATTTGTGGAATGGCCAAAATtaaaccacaatgctgcaaaaagctgATTACTTCTTACTATAAAtgtctcaaagctgtaattgccaaATATGGCTTTGCAACAAACTTTGTTTATATCTTTGtgtatgcttatgaatacatattttcatataagtacaaagtcaaaagccattatgtgtgtaaatatgaagtAGATACAAGTATATTGTATAACAAAAACGTAAATATTTCCCCTCACAGTAAAGGGAGAATTATAGGGTGGCTAAAACCGAATCATGTCAAACAATATGTTGTGCATTGTAGTTATTCTGTACTATAATGCTGCtagaaaccaaaataaaattaatcatgCTTGTTCATTCCTACTTAAAAAAGAAGTTAGCTGTTGGGAGAGATCATAGGGGCAAGATAAAGTTTCTCACAACAGCTAGCTTAAAacgtatatatgtgtgtatgggCTCTTAGCGTGGTGTCACACACATGCGGTAGGGTCTGGGTGAATACGTGAAGCCCATCTGGCCCTCCAAGCTCAGCTCTTCTCCAGGACAAGGGGAGAATGTAAAGCACTGGAACAGAGAGGTGAAGAACAGGAAGAGCTCCATACGAGCCAGCTGCTCCCCCAGACATACTCTCCTAC
>TU342974
ATATTAGAGGaaaatttaatctcatcatccaagaaactgaatctggggagaagatggacatttcaacaagacaacaaccccaaacatacagccaaatcAACTCAACTGGTTtctaaaaagaagaagaagaaggtgctTGCATGGCCTAGACAATCTCCTGACTTTATTTAAgaaggattttgaaattgtgagtCCATCAGTGGGACCCTTGTAACCTGAAGGTTTGAAGACAATTTGTGGAATGGCCAAAATtaaaccacaatgctgcaaaaagctgATTACTTCTTACTATAAAtgtctcaaagctgtaattgccaaATATGGCTTTGCAACAAACTTTGTTTATATCTTTGtgtatgcttatgaatacatatatttcatatcagtacaaagtcaaaagccattatgtgtgtaaatatgaagtAGATACAAGTATATTGtataacaaaaatgtaaatattcccCTCACAGTAAAGGGAGAATTATAGGGTGGCTAAAACCGAATCATGTCAAACAATATATTGTGCATTGTAGTTATTCTGTACTATAATgctgctagaaaaaaaaaaattaatcatgctTGTTCATTCCTACTTAAAAAAGAAGTTAGCTGTTGGGACAGATCATAGGGGTCAAGATAAAGTTTCTCACAACAGCTAgcttaaaatgtatatatctGTGTATGGGCTCTTAGCGTGGTGTCACACACATGCGGTAGGGTCTGGGTGAATACGTGAAGCCCATCTGGCCCTCCAAGCTCAGCTCTTCTCCAGGACAAGGGGAGAATGTAAAGCACTGGAACAGAGAGGTGAAGAACAGGAAGAGCTCCATACGAGCCAGCTGCTCCCCCAGACATACTCTCCTAC
>TU342975
ATATTAGAGGaaaatttaatctcatcatccaagaaactgaatctggggagaagatggacatttcaacaagacaacaaccccaaacatacagccaaatcAACTCAACTGGTTtctaaaaagaagaagaaggtgctTGCATGGCCTAGACAATCTCCTGACTTTATTTAAgaaggattttgaaattgtgagtCCATCAGTGGGACCCTTGTAACCTGAAGGTTTGAAGACAATTTGTGGAATGGCCAAAATtaaaccacaatgctgcaaaaagctgATTACTTCTTACTATAAAtgtctcaaagctgtaattgccaaATATGGCTTTGCAACAAACTTTGTTTATATCTTTGtgtatgcttatgaatacatattttcatataagtacaaagtcaaaagccattatgtgtgtaaatatgaagtAGATACAAGTATATTGTATAACAAAAACGTAAATATTTCCCCTCACAGTAAAGGGAGAATTATAGGGTGGCTAAAACCGAATCATGTCAAACAATATGTTGTGCATTGTAGTTATTCTGTACTATAATGCTGCtagaaaccaaaataaaattaatcatgCTTGTTCATTCCTACTTAAAAAAGAAGTTAGCTGTTGGGAGAGATCATAGGGGCAAGATAAAGTTTCTCACAACAGCTAGCTTAAAacgtatatatgtgtgtatgggCTCTTAGCGTGGTGTCACACACATGCGGTAGGGTCTGGGTGAATACGTGAAGCCCATCTGGCCCTCCAAGCTCAGCTCTTCTCCAGGACAAGGGGAGAATGTAAAGCACTGGAACAGAGAGGTGAAGAACAGGAAGAGCTCCATACGAGCCAGCTGCTCCCCCAGACATACTCTCCTAC
>TU342976
ATATTAGAGGaaaatttaatctcatcatccaagaaactgaatctggggagaagatggacatttcaacaagacaacaaccccaaacatacagccaaatcAACTCAACTGGTTtctaaaaagaagaagaaggtgctTGCATGGCCTAGACAATCTCCTGACTTTATTTAAgaaggattttgaaattgtgagtCCATCAGTGGGACCCTTGTAACCTGAAGGTTTGAAGACAATTTGTGGAATGGCCAAAATtaaaccacaatgctgcaaaaagctgATTACTTCTTACTATAAAtgtctcaaagctgtaattgccaaATATGGCTTTGCAACAAACTTTGTTTATATCTTTGtgtatgcttatgaatacatattttcatataagtacaaagtcaaaagccattatgtgtgtaaatatgaagtAGATACAAGTATATTGTATAACAAAAACGTAAATACTTCCACTCACAGTAAAGGGAGAATTATAGGGTGGCTAAAACCGAATCATGTCAAACAATATGTTGTGCATTGTAGTTATTCTGTACTATAATGCTgctagaaaataaaaataaaattaatcatgCTTGTTCATTCCTACTTAAAAAAGAAGTTAGCTGTTGGGAGAGATCATAGGGGTCAAGATAAGGTTTCTCACAACAGCTAGCTTAAAacgtatatatgtgtgtatgggCTCTTAGCGTGGTGTCACACACATGCGGTAGGGTCTGGGTGAATACGTGAAGCCCATCTGGCCCTCCAAGCTCAGCTCTTCTCCAGGACAAGGGGAGAATGTAAAGCACTGGAACAGAGAGGTGAAGAACAGGAAGAGCTCCATACGAGCCAGCTGCTCCCCCAGACATACTCTCCTAC

Function

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds molecular_function
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines molecular_function

KEGG:

id description
ko00380 Tryptophan metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU342965 False 865 lncRNA 0.38 2 4054457 4069715
TU342966 False 1294 TUCP 0.39 2 4063635 4069715
TU342967 True 1518 lncRNA 0.39 2 4054457 4070367
TU342971 False 862 lncRNA 0.38 3 4054457 4069715
TU342972 False 873 lncRNA 0.38 3 4054457 4069715
TU342973 False 868 lncRNA 0.38 3 4054457 4069715
TU342974 False 866 lncRNA 0.38 3 4054457 4069715
TU342975 False 865 lncRNA 0.38 3 4054457 4069715
TU342976 False 867 lncRNA 0.38 3 4054457 4069715

Neighbor

gene id symbol gene type direction distance location
hook1 hook1 coding upstream 9184 4024682 ~ 4045273 (+)
pfas pfas,LOC107665308,LOC107556148,LOC107593806,LOC107737373,LOC107737297 coding upstream 37907 3991667 ~ 4016550 (+)
LOC113546823 LOC108257899 coding upstream 137377 3905694 ~ 3917080 (+)
mgst3a mgst3 coding upstream 152591 3897015 ~ 3901866 (+)
LOC117599795 LOC107568747 coding upstream 168796 3878822 ~ 3885661 (+)
ppat ppat,LOC107683925,LOC107721366,LOC107737308,LOC107556156 coding downstream 31302 4101669 ~ 4115455 (+)
aasdh aasdh coding downstream 53691 4124058 ~ 4137561 (+)
cep135 cep135 coding downstream 106164 4176531 ~ 4196440 (+)
nmu NA coding downstream 165460 4235827 ~ 4238921 (+)
trnad-guc_16 NA coding downstream 257104 4327471 ~ 4327542 (+)
G289515 NA non-coding upstream 80442 3942274 ~ 3974015 (+)
G289517 NA non-coding upstream 105999 3948196 ~ 3948458 (+)
G289378 kdr,LOC107675844,LOC107578973 non-coding upstream 209778 3843115 ~ 3844679 (+)
G289363 NA non-coding upstream 315243 3710701 ~ 3739214 (+)
G289351 NA non-coding upstream 366541 3623064 ~ 3687916 (+)
LOC117599777 NA non-coding downstream 168659 4239026 ~ 4243951 (+)
G289615 NA non-coding downstream 195016 4265383 ~ 4334959 (+)
G289619 NA non-coding downstream 249094 4319461 ~ 4330272 (+)
G289521 NA non-coding downstream 275212 4345579 ~ 4363088 (+)
LOC117599675 LOC107732010 non-coding downstream 280381 4350748 ~ 4352801 (+)
trnad-guc_14 NA other upstream 66334 3988052 ~ 3988123 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other upstream 71763 3943494 ~ 3982694 (+)
cnstb LOC108257742 other upstream 1558405 2485036 ~ 2496052 (+)
LOC113546780 NA other upstream 1912276 2133158 ~ 2142181 (+)
ptchd4 ptchd4,LOC107732383,LOC107553442,LOC107732542,LOC107601530 other upstream 2033194 1996120 ~ 2021263 (+)
clocka clock,LOC107701480 other downstream 177963 4248330 ~ 4309929 (+)
trnad-guc_17 NA other downstream 258465 4328832 ~ 4338299 (+)
LOC113545190 NA other downstream 530688 4601055 ~ 4609601 (+)
dnm3a dnm3,dnm3a other downstream 871584 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 1665106 5735473 ~ 5801693 (+)

Expression


Co-expression Network