trnad-guc_17


Basic Information

Item Value
gene id trnad-guc_17
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4328832 ~ 4338299 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU343090
GGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCGACGGGGAGGCTTTCTGTTTATACATCAGTAAATAGGCTGATATCCCCAATATACACTagatggccaaaagtttgtagacgtcagatcatcacacccatatgtgcttcttccccaaactgctgccacaaagttggaagcacacaactgtatagaatgtcttagaatgctgtagcattacaagaATAATTCACTTTGCTGGGACTAAGGGGGcaaaaacctgttccagcatgtcaatgtccctgtgcacaaagcgagttccatgaagacatggcgtgtgaaggttggagtggaagaactcgagtgtcctgcacagagtcctgacctcaaccccac
>trnad-guc_17
TCCTCGTTAGTATAGTGGACAGTATCTCCGCCTGTCACGCGGAAGACCGGGGTTCGATTCCCCGACGGGGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU343090 True 381 lncRNA 0.48 2 4328848 4338299
trnad-guc_17 False 72 tRNA 0.48 1 4328832 4328903

Neighbor

gene id symbol gene type direction distance location
trnad-guc_16 NA coding upstream 1290 4327471 ~ 4327542 (+)
nmu NA coding upstream 89911 4235827 ~ 4238921 (+)
cep135 cep135 coding upstream 132392 4176531 ~ 4196440 (+)
aasdh aasdh coding upstream 191271 4124058 ~ 4137561 (+)
ppat ppat,LOC107683925,LOC107721366,LOC107737308,LOC107556156 coding upstream 213377 4101669 ~ 4115455 (+)
trnad-guc_22 NA coding downstream 11509 4349808 ~ 4349879 (+)
LOC113545323 LOC108258072,LOC107721804,LOC107581484,LOC107597850,LOC108414547,LOC107712838,LOC107658162 coding downstream 28466 4366765 ~ 4396120 (+)
LOC113545214 LOC108257527 coding downstream 69469 4407768 ~ 4419833 (+)
echdc2 echdc2,LOC107669145 coding downstream 87335 4425634 ~ 4432355 (+)
LOC113545289 LOC108258110,LOC108414737,LOC103029237,LOC107658161,LOC107721808,LOC107597864,LOC107669143 coding downstream 109348 4447647 ~ 4450922 (+)
LOC117599777 NA non-coding upstream 84881 4239026 ~ 4243951 (+)
G289530 LOC108257764 non-coding upstream 254866 4061818 ~ 4073966 (+)
G289532 NA non-coding upstream 262407 4060744 ~ 4066425 (+)
G289533 NA non-coding upstream 272847 4047209 ~ 4055985 (+)
G289515 NA non-coding upstream 354817 3942274 ~ 3974015 (+)
G289521 NA non-coding downstream 7280 4345579 ~ 4363088 (+)
LOC117599675 LOC107732010 non-coding downstream 12449 4350748 ~ 4352801 (+)
G289831 NA non-coding downstream 94936 4433235 ~ 4434790 (+)
G289866 angptl1,angptl1a non-coding downstream 191629 4529928 ~ 4539840 (+)
LOC117599674 NA non-coding downstream 285843 4624142 ~ 4627837 (+)
clocka clock,LOC107701480 other upstream 18903 4248330 ~ 4309929 (+)
G289531 NA other upstream 258465 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 340709 3988052 ~ 3988123 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other upstream 346138 3943494 ~ 3982694 (+)
cnstb LOC108257742 other upstream 1832780 2485036 ~ 2496052 (+)
LOC113545190 NA other downstream 262756 4601055 ~ 4609601 (+)
dnm3a dnm3,dnm3a other downstream 603652 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 1397174 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1797621 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2674443 7012742 ~ 7019686 (+)

Expression


Co-expression Network