G289866 (angptl1,angptl1a)


Basic Information

Item Value
gene id G289866
gene name angptl1,angptl1a
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4529928 ~ 4539840 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU343392
caGGAACCATACACTGGCAGTGTTATATTACCTGTATCTATAAGACTAATCATGGAGTCGAAGCACACTCCTGGTAATTTCTCTAGTGTCTGAAATTGGCTGTGCCAGAAACCCCCACCACCTCTCCACATGCTCAAAACTCAAAAATCCCAAACATGTTTATTACCGTCAGAGTTCAGGGTTCCCTGTGGTGCTGGTGGGATGCCCAGAGGGTCAGCGGTTGGTGGGACGTCCATGCGCGAGCCACGTGGGAAGGCTCGGTTGTTGTGTTCCCTATGGATCTCGTTGGTGAAGCGGTTGTTGTTCGCCGGGATGTTCTCAGGCACCACCTGCACCAGCGGTGGCACGGCAGGCAGCTCGTGGCGTCCATACCCGCGCATGCAGTGCTCTTCCAGCATGGAGATCAGCACTGACTGATTGTTGACGGTGGCAGCCAGGTTAGCGAAGCGCAGCTCCAGTTCCTTATAGCGCGAGGCCAGCCGTAGCATCTCGGATGTCACGTTAAGCACCCGGTTCTCGAGCTGCACTAACTCCAGCGAGTTGTCACGCTTGCATATTATTTCATGAAGTAGCTGCATGTAGAGCTGTGTGACACGTGAGTTCATGTTGCGCGACTCCTTGCGCAAGAGCTTCATCTCATTAACCAAGTTGCTGTCCACATCGGTCACGAGCTGCAGCGTCTCAATCTCGCGATGCTGCTTGGACAGCACTTCCTTCAGGTCAGAGATGTCCATGCGCGTCACTCGATCCTTTTCTGGCTCAGGCCCTGTGGCTGACGCGCAGATAGGTCCTGTAATCTTCTGCTGAGGCACCAAGAATGTGTACGAGCACCTTTTGGCATCATCAACTGGTGCCCGGCGACGCCTAGACAATACTGGCTCATTGCCTGAGTGACAGCTGCCCAGGGCAGCAAGACAGAAGAAGAGCATCATGCCCAGGTTCCATGTTTCTACTCTCATGGCTGCTGTGATTCTCTCCTCCCTGTCTGCCACCTCCTCCTTTTTTTGTTCTggcttttctttttttttttttt

Function

symbol description
angptl1a Predicted to enable signaling receptor binding activity. Acts upstream of or within angiogenesis; hemopoiesis; and positive regulation of Notch signaling pathway. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in several structures, including digestive system; heart; immune system; integument; and musculature system. Orthologous to human ANGPTL1 (angiopoietin like 1).
angptl1 Predicted to enable signaling receptor binding activity. Predicted to be involved in angiogenesis and transmembrane receptor protein tyrosine kinase signaling pathway. Located in extracellular space.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU343392 True 1033 lncRNA 0.53 2 4529928 4539840

Neighbor

gene id symbol gene type direction distance location
LOC113545289 LOC108258110,LOC108414737,LOC103029237,LOC107658161,LOC107721808,LOC107597864,LOC107669143 coding upstream 79006 4447647 ~ 4450922 (+)
echdc2 echdc2,LOC107669145 coding upstream 97573 4425634 ~ 4432355 (+)
LOC113545214 LOC108257527 coding upstream 110095 4407768 ~ 4419833 (+)
LOC113545323 LOC108258072,LOC107721804,LOC107581484,LOC107597850,LOC108414547,LOC107712838,LOC107658162 coding upstream 133808 4366765 ~ 4396120 (+)
trnad-guc_22 NA coding upstream 180049 4349808 ~ 4349879 (+)
fam20b fam20b,LOC107669149,LOC107658171,LOC107739853 coding downstream 21321 4561161 ~ 4581781 (+)
LOC117599796 NA coding downstream 101953 4641793 ~ 4642356 (+)
plpp6 plpp6,LOC107683852,LOC107597802,LOC107669136,LOC107712867,LOC107581521 coding downstream 276847 4816687 ~ 4822011 (+)
LOC113545285 LOC108257967 coding downstream 283198 4823038 ~ 4831944 (+)
LOC117599802 LOC108257967 coding downstream 295246 4835086 ~ 4846034 (+)
G289831 NA non-coding upstream 95138 4433235 ~ 4434790 (+)
G289521 NA non-coding upstream 166840 4345579 ~ 4363088 (+)
LOC117599675 LOC107732010 non-coding upstream 177127 4350748 ~ 4352801 (+)
G289615 NA non-coding upstream 194969 4265383 ~ 4334959 (+)
G289619 NA non-coding upstream 199656 4319461 ~ 4330272 (+)
LOC117599674 NA non-coding downstream 84302 4624142 ~ 4627837 (+)
LOC113545162 NA non-coding downstream 164822 4704662 ~ 4798444 (+)
G289989 NA non-coding downstream 191245 4731085 ~ 4731312 (+)
G289995 NA non-coding downstream 215666 4755506 ~ 4755735 (+)
G290004 NA non-coding downstream 262973 4802813 ~ 4803028 (+)
trnad-guc_17 NA other upstream 191629 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 219999 4248330 ~ 4309929 (+)
G289531 NA other upstream 459561 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 541805 3988052 ~ 3988123 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other upstream 547234 3943494 ~ 3982694 (+)
LOC113545190 NA other downstream 61215 4601055 ~ 4609601 (+)
dnm3a dnm3,dnm3a other downstream 402111 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 1195633 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1596080 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2472902 7012742 ~ 7019686 (+)

Expression


Co-expression Network