LOC113545190


Basic Information

Item Value
gene id LOC113545190
gene name NA
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4601055 ~ 4609601 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU343408
CAAAGGGATATACCTGAACATGCGTACAGTTAAGGAACCCAGCATTTACCTGAACTTCACTGTGACCTGGAACAATAGTCTGAGGCTTGAGCATGGCAGTGAGGTAATGGTGCCCCACGCAGGCCCCTACGTTTTCTACATCTGTGCTCTTGTGTATGGTAATGGCACCAAAGGCAATCTGACCCTGTCACAGGGGAACACAAATATCTCCTT
>XM_026944392.2
TTGGGTCAGCAACAAGACCTCACCTAGACAAGCAACCAGCTCCCTGGCCAAGAGTGCCTAGCAACATTTCCTCTGGTGTCTGAAGAAGGCAAACATCCCCAAACTGCAAAGGGTTGAGTTTTTTTCAAGTATGTCAGGATGAGGCACTCGAACAACTTCATTAGAACAGATGTTAAGACAAAAGGACAGTAGTCGTTGAGAGATGCTCCAGTTCTCATTATGGACACCAAAGATCCTGAGGCGGGGATGCTGCACGGCCAGGCAGCCGTCGGCCTGGAGACGCGCGGACAGAGGAAGCTGCCGGCGCTGCTCTTCGCTCACAGCGTCCTGACGTGCGCCTGCGCCGCGCTCTGCAGCTACACGCTCTACAAAGTCCACCACACAGAGGAAGCCTGGCATGAAACAACACGATCGACTGTGGACAAAGGGATATACCTGAACATGCGTACAGTTAAGGAACCCAGCATTTACCTGAACTTCACTGTGACCTGGAACAATAGTCTGAGGCTTGAGCATGGCAGTGAGGTAATGGTGCCCCACGCAGGCCCCTACGTTTTCTACATCTGTGCTCTTGTGTATGGTAATGGCACCAAAGGCAATCTGACCCTGTCACAGGGGAACACAAATATCTCCTTTGAACTGTTGGCCTCATCAGGCAAGAGTTGGGTGAGACACCAGCAAGTGATCAGCCTCTACGAAAAGGAGAAAGTCACCTTCCATTTCAGAAACACATATGAACCATATCTCTTCCTGGAGGTCCTCCGTGTAGGCCTACACTACTTGTTGGGAGCCCAAGACTTTGAATCTCCAGAATATGACCCACATGCCTAAAGGAATTATTATTCAATGCCAAGGTACTCCATACCCTGCTCATAAGGGAAATGGTATGGATTATTTCTTATTAACACTGAATATTTGTCTCACAGTTAGTCAGCAAATTTGCATGATGATAAGGTGGTAGCAGTGCTTTTAGTTACACTGGACAGATAGATGCCTGTGAGGccaaagaagacaaaaaaaaagaaaaaaaagaacatattatATGGTAAAGATGCTTTCTACTCAGAAAACAGTAAATGAATATATGTAAAACGActcctgggggaaaaaatgcgcCATTTTGGGCCCAAGCTCAaaattgcaaaatattaaacttttaatggtcttaacaacaaatctttggtcaggaaattagcaagaagtAAGCAAATAGATAAAAGAAATTAGTAAgagaagcttttccctttgatttctttaaatgtttaagaagCGTGGCCCTTGATGGGTTGCACCAGGTGAGGCAGATTaccaaatgatgaaaaaaaaacatcctagaAGATATTTTATAAATTCTGTACACCCAGATGTgttttagtttgaattttatatcaaacattttaatcattacatGATATTACATGACTTTGTGTACaggaagactatataagtgaatttccctgtttctagcttttccccagaaagttca
>XM_034313854.1
TTGGGTCAGCAACAAGACCTCACCTAGACAAGCAACCAGCTCCCTGGCCAAGAGTGCCTAGCAACATTTCCTCTGGTGTCTGAAGAAGGCAAACATCCCCAAACTGCAAAGGGTTGAGTTTTTTTCAAGTATGTCAGGATGAGGCACTCGAACAACTTCATTAGAACAGATGTTAAGACAAAAGGACAGTAGTCGTTGAGAGATGCTCCAGTTCTCATTATGGACACCAAAGATCCTGAGGCGGGGATGCTGCACGGCCAGGCAGCCGTCGGCCTGGAGACGCGCGGACAGAGGAAGCTGCCGGCGCTGCTCTTCGCTCACAGCGTCCTGACGTGCGCCTGCGCCGCGCTCTGCAGCTACACGCTCTACAAAGTCCACCACACAGAGGAAGCCTGGCATGAAACAACACGATCGACTGTGGACAAAGGGATATACCTGAACATGCGTACAGTTAAGGAACCCAGCATTTACCTGAACTTCACTGTGACCTGGAACAATAGTCTGAGGCTTGAGCATGGCAGTGAGGGGAACACAAATATCTCCTTTGAACTGTTGGCCTCATCAGGCAAGAGTTGGGTGAGACACCAGCAAGTGATCAGCCTCTACGAAAAGGAGAAAGTCACCTTCCATTTCAGAAACACATATGAACCATATCTCTTCCTGGAGGTCCTCCGTGTAGGCCTACACTACTTGTTGGGAGCCCAAGACTTTGAATCTCCAGAATATGACCCACATGCCTAAAGGAATTATTATTCAATGCCAAGGTACTCCATACCCTGCTCATAAGGGAAATGGTATGGATTATTTCTTATTAACACTGAATATTTGTCTCACAGTTAGTCAGCAAATTTGCATGATGATAAGGTGGTAGCAGTGCTTTTAGTTACACTGGACAGATAGATGCCTGTGAGGccaaagaagacaaaaaaaaagaaaaaaaagaacatattatATGGTAAAGATGCTTTCTACTCAGAAAACAGTAAATGAATATATGTAAAACGActcctgggggaaaaaatgcgcCATTTTGGGCCCAAGCTCAaaattgcaaaatattaaacttttaatggtcttaacaacaaatctttggtcaggaaattagcaagaagtAAGCAAATAGATAAAAGAAATTAGTAAgagaagcttttccctttgatttctttaaatgtttaagaagCGTGGCCCTTGATGGGTTGCACCAGGTGAGGCAGATTaccaaatgatgaaaaaaaaacatcctagaAGATATTTTATAAATTCTGTACACCCAGATGTgttttagtttgaattttatatcaaacattttaatcattacatGATATTACATGACTTTGTGTACaggaagactatataagtgaatttccctgtttctagcttttccccagaaagttca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU343408 False 213 lncRNA 0.48 2 4607368 4608750
XM_026944392.2 True 1486 mRNA 0.43 4 4601055 4609601
XM_034313854.1 False 1396 mRNA 0.43 5 4601055 4609601

Neighbor

gene id symbol gene type direction distance location
fam20b fam20b,LOC107669149,LOC107658171,LOC107739853 coding upstream 19274 4561161 ~ 4581781 (+)
ralgps2 ralgps2,LOC107739854,LOC107712857 coding upstream 43568 4453316 ~ 4557487 (+)
LOC113545289 LOC108258110,LOC108414737,LOC103029237,LOC107658161,LOC107721808,LOC107597864,LOC107669143 coding upstream 150133 4447647 ~ 4450922 (+)
echdc2 echdc2,LOC107669145 coding upstream 168700 4425634 ~ 4432355 (+)
LOC113545214 LOC108257527 coding upstream 181222 4407768 ~ 4419833 (+)
LOC117599796 NA coding downstream 32192 4641793 ~ 4642356 (+)
plpp6 plpp6,LOC107683852,LOC107597802,LOC107669136,LOC107712867,LOC107581521 coding downstream 207086 4816687 ~ 4822011 (+)
LOC113545285 LOC108257967 coding downstream 213437 4823038 ~ 4831944 (+)
LOC117599802 LOC108257967 coding downstream 225485 4835086 ~ 4846034 (+)
LOC113545311 LOC108257966,LOC108415675 coding downstream 237980 4847581 ~ 4854725 (+)
G289866 angptl1,angptl1a non-coding upstream 61215 4529928 ~ 4539840 (+)
G289831 NA non-coding upstream 166265 4433235 ~ 4434790 (+)
G289521 NA non-coding upstream 237967 4345579 ~ 4363088 (+)
LOC117599675 LOC107732010 non-coding upstream 248254 4350748 ~ 4352801 (+)
G289522 NA non-coding upstream 250491 3984747 ~ 4350564 (+)
LOC117599674 NA non-coding downstream 14541 4624142 ~ 4627837 (+)
LOC113545162 NA non-coding downstream 95061 4704662 ~ 4798444 (+)
G289989 NA non-coding downstream 121484 4731085 ~ 4731312 (+)
G289995 NA non-coding downstream 145905 4755506 ~ 4755735 (+)
G290004 NA non-coding downstream 193212 4802813 ~ 4803028 (+)
trnad-guc_17 NA other upstream 262756 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 291126 4248330 ~ 4309929 (+)
G289531 NA other upstream 530688 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 612932 3988052 ~ 3988123 (+)
ipo13 ipo13,LOC107697216,LOC107745904,LOC107593276,LOC107691006,LOC106613950 other upstream 618361 3943494 ~ 3982694 (+)
dnm3a dnm3,dnm3a other downstream 332350 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 1125872 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1526319 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2403141 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 3167996 7777597 ~ 7782008 (+)

Expression


Co-expression Network