G290009


Basic Information

Item Value
gene id G290009
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4808540 ~ 4814796 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU343551
TGCAAAACCAAAAATACCACACCTTGCTCCAGGCACAGTGGTCCGCCACGCTGTCTATAGACAGAGCAATCATCTTCACACCCCGCTTCTTAAACTCGTCGCTGAGCCTAGCAGCACAAGCCAGCTCGGTTGTGCACACGGGGGTGAAGTCGCGTGGGTGAGAGAACAGGATGCCCCATAGTCGCCCAAGAATTCGTGAAATTTTATCTTGCCAATAGTCGTGTCCGCTTCAAAGTTAGGAAAGACATCTCCTAGCAGGACTCCAGGCATGATGACAcactctctcctcttctcttctcttcttttctctctggaGACACAGCGAGGTGTGAGGGAAAACACGCTGCCTCCACGAAATAAAGCGCTACGCTT
>TU343552
ATATATAGGATTTTGTTCATtctcttttaattttatgtgGCCTTGTGACTTTGTATGGGAAGCCATGTTTAGGAAGTCCAATAAGTCCAATAATTCCATGAGCAAAAGTCACAGTTTTTGCTTAAACTACTATATTTCATTGACATTGTGTCAAAGTCTGAGGTAAGAACAACCAATAGAATTCAAGATTAAGTTCAGTTTAAATATTTCTGCTATTTTGACATGACTCTAGTAGAAGCTTGAAAAattgtgtgtattatgtttAAAGTATGTTGATGTTATGTTCCAAATAGCAAGGTCCTACCCTACTGTTTTATTACTATATTCAAACTTAACAAGATATCAGCCCATCAGATATCAGCCTCGAGTCGACTGTACACGTTTACATAAAATGAACATAGAATATGTATGACTTTGAAGTGCTACATAGATCACATCAAAACATTCGAATGTCAGCAACcttcatttatttgaattataaaGAACACAGTTTGATCTTAGAAATTAGAAGTTATAAAGGAtgcaacgaccaatcactgatcaccattgtttgtccCACCCACAATTCTCTGTTCTCTTTTTTAAGTGAGTTATTCCTTCTGCAACTATTTCCTTTGGGTCAATTTCCTGACTACTTGCTACCACAGAAgttataatattttgtaaataaataataataataataataataataataataataataataatccattttGTATCATACagcagttagttccagtcccctgatttgattggacaagcggTGTTCCGAGAGTGCTGAtgtttagtataacagcactgggacaCTGCACTGTTTGTATCAGTCCTCTTTTCTGTGTTCTTTACACAAAATTCCAATCCTAGCAACAGTTTTGAAaccattactacacttactacggGCTGTCATCAGTCTGTGCATTGGCATGACAACATGCAACGCTcaatccagctgtggcttcttcagAAAATAATTTCGTTaccggagcaaaaataaacaaaatatctagtcatattgtgtctgaaaggttagttacttgatattaatttcttattaataaaactgttgtataaaagcaacatcACAATATCAcggccatgctgatattcagtagaACAGCACTCTTGATCATTTGATATTGTTTAATcctgataaaactctattctcTTCTATTGCAATCTATTCAAGGTGTTTTTAGGGAAACTTCCGTTTTCATATAATGTGGaatttgatatgcaaatgatcatgaccatacatgaatatgcaaattagtctatgaCATCATCTGGGAACTTCTAGTAACTTTTTGAGCAGgatactttcccctgaaaagagttggggaaaacactgtaaaataagACTGTAAAATAAGACCTGAACAAAAGTAattacatcagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaatgtccCTTAGgttaaatccttttttaaataaataaataaatagttttcaaaacacacacacacacacacatttgcacatccATTATGCTTTGTAACATAAGACAAGCATTTGATCTTATGTTGCACAAGAGCAGAAGGATGACCTAAATGCAGAAATCCCCTTTCTCCTTGTTTACAGAGAAATTGATGATTGCCTAGAATGAGGAACCTCTCTGGCCCTGTATTCTGCACCATGACACTGCGATTATTCCCCTCTGCAATAACTCCCTATGGGTTTCCAACACCACGTCTGCAACAAACAGTTATCTAATTCCACATTTATTTACTAGGAAGGATATAAGAGCTAGCAAACCCACAGCCATTTGTTTCCTAGACAGAAAACTAGGAATGTAGCTAATGCCTATAATTATGATGTAATAATTTTTGTGACAGAATATCAAGGGATGGGAATGGAAAACTACTCTAAcagcaagaaaacaaaacaagcttTTCTCCATATCACAAGAATATAATTAGCTAGCAGAGCTTTCCTGTGCCTGCCTTAGGTGCACCTGGATCACATGTAGATTAGgatgatatatgtatatatgtatgaatgGAGAGTACTTCAACTTAATCTGATCTGATTTAATCGCAGTTGTGGTGCTTTTCATCTTTGTACAGACTGTAATCACAGCCCACATGGTGGCAATCCAGCTCTACAGTTTGCAGTCTGGGTTAGGTGACTTCTACAATACAGCTATAATTAGCTTTCTGGACAAATTCTTGGAAGCGTCTGATCACAGTGGTGTAAGAATCACACGTGATGGCTAACCAGATCAGGTTGGACGTTACGTGTCGCAGTACAGTAAGGCCACATGAAGTGTCCACTCAATTCACTCAGAGTTGCTACTTACGAGTCGCCCAAGAATTCGTGAAATTTTATCTTGCCAATAGTCGTGTCCGCTTCAAAGTTAGGAAAGACATCTCCTAGCAGGACTCCAGGCATGATGACAcactctctcctcttctcttctcttcttttctctctggaGACACAGCGAGGTGTGAGGGAAAACACGCTGCCTCCACGAAATAAAGCGCTACGCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU343551 False 372 lncRNA 0.51 2 4808540 4814796
TU343552 True 2525 lncRNA 0.37 2 4812169 4814796

Neighbor

gene id symbol gene type direction distance location
LOC117599796 NA coding upstream 166184 4641793 ~ 4642356 (+)
fam20b fam20b,LOC107669149,LOC107658171,LOC107739853 coding upstream 226759 4561161 ~ 4581781 (+)
ralgps2 ralgps2,LOC107739854,LOC107712857 coding upstream 251053 4453316 ~ 4557487 (+)
LOC113545289 LOC108258110,LOC108414737,LOC103029237,LOC107658161,LOC107721808,LOC107597864,LOC107669143 coding upstream 357618 4447647 ~ 4450922 (+)
echdc2 echdc2,LOC107669145 coding upstream 376185 4425634 ~ 4432355 (+)
plpp6 plpp6,LOC107683852,LOC107597802,LOC107669136,LOC107712867,LOC107581521 coding downstream 1891 4816687 ~ 4822011 (+)
LOC113545285 LOC108257967 coding downstream 8242 4823038 ~ 4831944 (+)
LOC117599802 LOC108257967 coding downstream 20290 4835086 ~ 4846034 (+)
LOC113545311 LOC108257966,LOC108415675 coding downstream 32785 4847581 ~ 4854725 (+)
prrc2c prrc2c,LOC107712868 coding downstream 44527 4859323 ~ 4886501 (+)
G290005 NA non-coding upstream 1960 4804560 ~ 4806580 (+)
G290004 NA non-coding upstream 5512 4802813 ~ 4803028 (+)
LOC113545162 NA non-coding upstream 10096 4704662 ~ 4798444 (+)
G289995 NA non-coding upstream 52805 4755506 ~ 4755735 (+)
G289989 NA non-coding upstream 77228 4731085 ~ 4731312 (+)
G290028 NA non-coding downstream 81326 4896122 ~ 4896387 (+)
G290030 NA non-coding downstream 84171 4898967 ~ 4907812 (+)
LOC117599804 NA non-coding downstream 332389 5147185 ~ 5150925 (+)
G290192 NA non-coding downstream 438721 5253517 ~ 5253723 (+)
LOC113545370 NA non-coding downstream 487834 5302630 ~ 5306902 (+)
LOC113545190 NA other upstream 198939 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 470241 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 498611 4248330 ~ 4309929 (+)
G289531 NA other upstream 738173 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 820417 3988052 ~ 3988123 (+)
dnm3a dnm3,dnm3a other downstream 127155 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 920677 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1321124 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2197946 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 2962801 7777597 ~ 7782008 (+)

Expression


Co-expression Network