G290030


Basic Information

Item Value
gene id G290030
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 4898967 ~ 4907812 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU343586
AGTAGTTCACAGTCTATTAATGCAATTCCCTTGTTTAAGGAAtggatatttacatataaattaaatacaaaagaaTAGTACATCATTAAAGCGATACAAGTTGATACAAATTTACAGATGTCTCCATGTTACCTCCTGTTAACAATGAAACCATCAAGAGCAACTCACCTATAGGCTATACAAATCTGATTACTCCTCTAACCAACTTCCAGCGGTACTAAATGCAAACACTGTGCTCGTTCCTCCATTTTAAAGCAAGGAAGAGTGTAGGTTTTTAAATCCCATGCACTGGTAACAAGCATATCATTTCCATGTGACCTCTCCAAAAATACTGTCGTTAATTCTCATCCTACTTTATTAGATATATTCAGTGCAAGCCAGATGAGTCATTTTTTTGCCAGCTTTACATTTATGAGTAGTATATAATTTTAAACatgggcattttttttaataagctacAGATTTGAATTTCCACTCATTTCATCACCTCATTGCTGTAAACGTATTTAGATGAGTATTCAGGTTTGCATGGCCTTACACCTTAATGAAGCTTATAAAGGCAGTGAGCCCGTCAAAGTCGAACTTgccaaattattaaaaaatcatttacttAAACCGTTATAAGAAGTGCTCTGTGAAAACCAAAACGCTACAACTCACCACAATTAGCCGTgatcatttcacatttttttttaacacctgCCAAGTAACTGAAAAGTATTTCCTTTTAGAGAAAATGATGATAGAAGCTGATGTTTAAaagcatctctttctctctgccagTGGATCTTGGATTAATTCTAATAACGTGTTTAAAACCTTAATGAGATCATATCAACAGTACAGAGTGAAGGCTTCCTCTTCTGCATGGCACCTAATTCCACtaatgtggggggaaaaaaatgatgtgtgtgtctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgctcataAGCATGAGAGTAATGGTTGAGGTCTTTGTTTTGTCAGAcaacagtataataataaaatcagatATAAACCTTCAGACTAAGACTGATTCTAGATTTAGAAACACTACTATGTATATACATTTACTGCATGAGTAGGGTGGGGATGTAGGGTGGACCACTTTGCAAAGGCGTGTTGACTTATTCAAAGAACATAAGcccacacatacgcacacacattcTTCACTGCCCCAGTGTTGTAGATGAAGCTTCAGTGAGACAGTTCAGTGGGTCTCGCAGCACCCCATTCTTGTGTGGAGGAATGGCaaaggaggaggtggaggaggaggaggatggaggaaGAGCAGATGAAGCCAACCTCCCTGCAGGAAACTAGTGATACCGCAGTATCACAG
>TU343587
AGTAGTTCACAGTCTATTAATGCAATTCCCTTGTTTAAGGAAtggatatttacatataaattaaatacaaaagaaTAGTACATCATTAAAGCGATACAAGTTGATACAAATTTACAGATGTCTCCATGTTACCTCCTGTTAACAATGAAACCATCAAGAGCAACTCACCTATAGGCTATACAAATCTGATTACTCCTCTAACCAACTTCCAGCGGTACTAAATGCAAACACTGTGCTCGTTCCTCCATTTTAAAGCAAGGAAGAGTGTAGGTTTTTAAATCCCATGCACTGGTAACAAGCATATCATTTCCATGTGACCTCTCCAAAAATACTGTCGTTAATTCTCATCCTACTTTATTAGATATATTCAGTGCAAGCCAGATGAGTCATTTTTTTGCCAGCTTTACATTTATGAGTAGTATATAATTTTAAACatgggcattttttttaataagctacAGATTTGAATTTCCACTCATTTCATCACCTCATTGCTGTAAACGTATTTAGATGAGTATTCAGGTTTGCATGGCCTTACACCTTAATGAAGCTTATAAAGGCAGTGAGCCCGTCAAAGTCGAACTTgccaaattattaaaaaatcatttacttAAACCGTTATAAGAAGTGCTCTGTGAAAACCAAAACGCTACAACTCACCACAATTAGCCGTgatcatttcacatttttttttaacacctgCCAAGTAACTGAAAAGTATTTCCTTTTAGAGAAAATGATGATAGAAGCTGATGTTTAAaagcatctctttctctctgccagTGGATCTTGGATTAATTCTAATAACGTGTTTAAAACCTTAATGAGATCATATCAACAGTACAGAGTGAAGGCTTCCTCTTCTGCATGGCACCTAATTCCACtaatgtggggggaaaaaaatgataagtgtgtgtgtgtgtgtgcatgcatttttaacagtttaacatAGAAAAATCTGAACACAGACAACAGCCATTAATCTTCCTTATGTCCTCCCACACTAGGAAGCAGGAGAATGCAGTGATgaggtgcttcaacaatgtatgGACATTTTGTTTACTGAGTGGACAACTATGCATCCAGTGACGTTAGAGGTTTAATCTAATTTAACATTCGCCCCTTTATCcattatttgtttataactctcagtctctctctctctctctctctcacacacacacacacacacactcattgacTCAAATCACCTGAAGAACACTACTACTAGGTGTCTTATTTGTCATACACTAAATGTACAATCACTATAttgtcaaaagtttgtggactcctgaccatcacacccatatgttgttcttccccaaactgttgccacaaagttcgAAGCAccgaattgtct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU343586 True 1360 lncRNA 0.38 2 4898967 4900348
TU343587 False 1360 lncRNA 0.36 2 4898967 4907812

Neighbor

gene id symbol gene type direction distance location
prrc2c prrc2c,LOC107712868 coding upstream 12466 4859323 ~ 4886501 (+)
LOC113545311 LOC108257966,LOC108415675 coding upstream 44242 4847581 ~ 4854725 (+)
LOC117599802 LOC108257967 coding upstream 52933 4835086 ~ 4846034 (+)
LOC113545285 LOC108257967 coding upstream 67023 4823038 ~ 4831944 (+)
plpp6 plpp6,LOC107683852,LOC107597802,LOC107669136,LOC107712867,LOC107581521 coding upstream 76956 4816687 ~ 4822011 (+)
mettl13 mettl13,LOC107733805,LOC107712871 coding downstream 24677 4932489 ~ 4939511 (+)
suco suco,LOC107712873,LOC107687343 coding downstream 90336 4998148 ~ 5048442 (+)
scrn2 scrn2,LOC107697287,LOC107581469,LOC107733816 coding downstream 144218 5052030 ~ 5064149 (+)
mysm1 mysm1 coding downstream 158498 5066310 ~ 5077918 (+)
oma1 oma1 coding downstream 171409 5079221 ~ 5097477 (+)
G290028 NA non-coding upstream 2580 4896122 ~ 4896387 (+)
G290009 NA non-coding upstream 84171 4808540 ~ 4814796 (+)
G290005 NA non-coding upstream 92387 4804560 ~ 4806580 (+)
G290004 NA non-coding upstream 95939 4802813 ~ 4803028 (+)
G289995 NA non-coding upstream 143232 4755506 ~ 4755735 (+)
LOC117599804 NA non-coding downstream 239373 5147185 ~ 5150925 (+)
G290192 NA non-coding downstream 345705 5253517 ~ 5253723 (+)
LOC113545370 NA non-coding downstream 394818 5302630 ~ 5306902 (+)
G290417 NA non-coding downstream 636306 5544118 ~ 5599007 (+)
LOC117599803 NA non-coding downstream 672006 5579818 ~ 5588495 (+)
LOC113545190 NA other upstream 289366 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 560668 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 589038 4248330 ~ 4309929 (+)
G289531 NA other upstream 828600 4054457 ~ 4070367 (+)
trnad-guc_14 NA other upstream 910844 3988052 ~ 3988123 (+)
dnm3a dnm3,dnm3a other downstream 34139 4941951 ~ 4979400 (+)
usp24 usp24 other downstream 827661 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 1228108 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 2104930 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 2869785 7777597 ~ 7782008 (+)

Expression


Co-expression Network