G290419


Basic Information

Item Value
gene id G290419
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 5647377 ~ 5655687 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU344031
ACTCGGGAGACATTTTAAATCATGTACAGACGTGAATACAGAGGACAAACACAGGAAAACTAATGTTATTCTTGCTGCAGATTTTCTGTTGCATGTTTTGCGTCATGTGCATGTCAATGGGCCTTAGTCAGGGGATGCAAAGATCAGACAAAGATAGCCGTGTCGTCTCCCCCAAAAAAAAGTGGGACCTCAGTGAACAGGAGTTTCACTTCATTATCAGAATCCTGTCCATTGGATTGGTGGATGCTGACCCTGACATTCTGCACCACTTAAAAGAGTACAGAGATCTGCACAGAATTTCGTCCTGAGAATGACATCCTCATCCATAAGACAGGCTGCTGTACAACGCAACAGTCATGACACTTCCTTTCTGACTAGGAGAGCACTTCATAGCAATAGTTCAGTAcataaatgagatttttttgttatattagaGCAGGCAGGAGATTTCACGTTCTGCATCATGATCATGTTTAATGGTACTAGACCTAAGGAAGTGCAAAATGTGCAACAACAATATTTCACTTTTAGCAATGTAACAATTCTTTAGAAAACAGcacaaatttacaaaaacacaTGTGCAATTTATTAATTGGAGAACACAAAATTGCAAATTAAGAGCATGAAAAAATTCACTTCCACACATTACCTCAATTTCAAGACCTTAATTATTGAAACAACTAAATAGTAATATTACTAATAGTGATACTACAAActatactaaatactaaataaacaacTCTATTGGCCTTGAGTTCTAATGTGTCTGAAAGCCCTTTAATGGCTTAACTGATGTGTTTTGTACCAGTCATAAGCATGCATGATTTCCACTGTATCAAAACTATGCTTGTCTGGGAATAAAGGGAC

Function

GO:

id name namespace
GO:0065009 regulation of molecular function biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU344031 True 867 lncRNA 0.37 4 5647377 5655687

Neighbor

gene id symbol gene type direction distance location
plpp3 plpp3,LOC107716555,LOC107712879,LOC107697342,LOC107657212 coding upstream 71807 5542956 ~ 5575570 (+)
LOC113545193 NA coding upstream 126744 5505839 ~ 5520633 (+)
dab1a dab1,dab1a,LOC107581465 coding upstream 144973 5327165 ~ 5502404 (+)
oma1 oma1 coding upstream 549900 5079221 ~ 5097477 (+)
mysm1 mysm1 coding upstream 569459 5066310 ~ 5077918 (+)
dhcr24 dhcr24,LOC107581458,LOC107687183,LOC107566150 coding downstream 188346 5844033 ~ 5856556 (+)
si:ch211-121a2.4 si:ch211-121a2.4,LOC108257924,LOC103033168,LOC108416079,LOC107581514,LOC107716560,LOC107566151,LOC107687197,LOC107712847 coding downstream 207904 5863591 ~ 5868013 (+)
sirt5 sirt5,LOC107687181,LOC107712885 coding downstream 219501 5875188 ~ 5887559 (+)
adcy1a adcy1a,LOC108257925,LOC108416099,LOC107581454,LOC107559745,LOC107697434,LOC107687179,LOC107712833 coding downstream 249007 5904694 ~ 5945486 (+)
igfbp1a LOC100305121 coding downstream 302744 5958431 ~ 5961185 (+)
G290417 NA non-coding upstream 48370 5544118 ~ 5599007 (+)
LOC117599803 NA non-coding upstream 58882 5579818 ~ 5588495 (+)
LOC113545370 NA non-coding upstream 340475 5302630 ~ 5306902 (+)
G290192 NA non-coding upstream 393654 5253517 ~ 5253723 (+)
LOC117599804 NA non-coding upstream 496452 5147185 ~ 5150925 (+)
G290562 NA non-coding downstream 77044 5732731 ~ 5734300 (+)
G290566 NA non-coding downstream 146111 5801798 ~ 5804340 (+)
G290567 NA non-coding downstream 148989 5804676 ~ 5805588 (+)
G290569 NA non-coding downstream 151319 5807006 ~ 5807916 (+)
LOC117599801 NA non-coding downstream 160215 5815902 ~ 5819066 (+)
dnm3a dnm3,dnm3a other upstream 667977 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 1037776 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 1309078 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 1337448 4248330 ~ 4309929 (+)
G289531 NA other upstream 1577010 4054457 ~ 4070367 (+)
usp24 usp24 other downstream 79786 5735473 ~ 5801693 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other downstream 480233 6135920 ~ 6160040 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 1357055 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 2121910 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 2387699 8043386 ~ 8074444 (+)

Expression


Co-expression Network