b4galt6 (b4galt6,LOC107712262,LOC107687169,LOC107712895)


Basic Information

Item Value
gene id b4galt6
gene name b4galt6,LOC107712262,LOC107687169,LOC107712895
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6135920 ~ 6160040 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU344338
CAGTGGAGCTAGCGGTCACACCTTCCGGATATACCGCCTTCTCGTTTCATTCTTTACTTGAACTCTTTTTAAACCTGTTATTTTAGTCAGTTTTAGTGTCGGGAACATATTTGTAGACAGTATTTTCGGTGTTGTGTTTGAGaaagcagaggaggaggaggagaaagaggaggagtaGAAGTTCTCGGCTCATTTCCTCCTCCTCACCCACTTCATATGAAAACATGGTGCATAGGCAGGTGCGGATTTGATTTCACATTATTCGCTCGTTTTCTGCTCCCTAACCCCACCATGAGCCATGTACAGTGTTTGCGGATTATCTGTGGACTGATTTAACATCTGCTTTTGCTAActgtgaaatttttttcttcctttttttgggGTCAGTCTGGAATTTTCGTCTGAGAGTGATAGTAGCTTGTTAAAAAAGGATTAGTTTGGTCCAAGAAAAACATTACATAACTAACTAAACATTAAACACTGCACCTAAATTTGACATGCATCAAATTgaacacattcattttaattaataaactcaCACCCCTTTAGCTGTTTAGTTGGAGAACTGAGTTTTTCATTCAATGTGTTGTGGAAGAAATGAACATCAAGGAAAATGCGTTGTTATGACAACATATTATAAGTGACTGGCTGACTAGCAGACAGTGTTCTGTGGTGGATGCTGGTCAGACAGTGGGCAAcagtatttcatttaaatacagGAGATCTTGCATTCTCACATTGTAACACAATGTGTGCATCACTTAGACTTGGTCTGAATGATTATTATCTGTTCATCTTCAgtcctttcatgcataaatgtAGTGAACTTTCGTCTATAGAACCAAAAATGAAAGTTacaaactgtatttaaaaaaaaaaagtatctttACCAAGGTGCTTGCAATGTGCAAAGTGTGAAATCTTGTTATTAAGCTACTAGCAACTTTTATGAAATTCATCACAAATGACTTATGGCATtgttattgtattaaaaaagaTGAGGTTTCCCACCTCGGGAGGTTTTTAAGCCTTCTGTCTTAGCCCTGTATTCCTAATTTGGCTTATGCTCGGAGTGTGTTGTGTCCAAAATTTTTGAACCTGTGACCCGTTTTTAGTTAGTTACCATCATGAGGTGGCCTAGGTTTTAAACAGTTTCATCtcaaaaagtttttatttaaaaataaattgcacCCCATTCCTTGTCCCTCTGTGTCTTTGAAATGATTGAAAAATATAGATTTTGAAACATGTATTCTCATTTACAGATTGTCATAGAGTGTTACGTTTTTTTGCAGTATTCATATTTGTGCCTTGAGTTCTTTTCTTTACACATTTGCATtcatgattgacagttgcaGTGAGGTGGCTGTTTTGGTctttctaaaatgaaaataatatcgagtgcacatttatttttcagaagtatttaatttaaatctgGATTTAAATGTGTAGTcttctaaaacatttaaaaacgaATGAATTGGAGCAGAAAGCCAGGGGACCCTTTCCTCTGTGTCTCGTACTGTTTTTCAGGGTCCATGTTGTTTTCTGCAGCACTCTTTTTGGAAAGGGGATGAGCGATATTGACTGCTTTGACTGATGTGTACAATCCTGatgttccttttttcccccGTTTTTCCGGTCTCTTTACTGTTACCGGTTTGCTCACTGCGATACACTCTGTAATGACCATTAAAAGAGTTTATAGTTGAAAACTCAGAGAGTAATCTCTTTCTTGAATGTGTTCATCGTGGTGACCTGTTTACGGGTATGGGAAATGTGGGTGGTGTGGGTATTTGGCatgctgtgtgtatttattcatGTTCTTTCCCCACTACAGCTGTTGTGGTGTAGGAGAAGGGGCTTAGTAACAGGGCCAGAGTGTAATGATGATGTCCTTCTGCATGAGCCTCAAACACCAC
>XM_026944686.2
GTAGTAGAGTGTGCGGATTCCCCCCCAGGGTGCAGTGGAGCTAGCGGTCACACCTTCCGGATATACCGCCTTCTCGTTTCATTCTTTACTTGAACTCTTTTTAAACCTGTTATTTTAGTCAGTTTTAGTGTCGGGAACATATTTGTAGACAGTATTTTCGGTGTTGTGTTTGAGaaagcagaggaggaggaggagaaagaggaggagtaGAAGTTCTCGGCTCATTTCCTCCTCCTCACCCACTTCATATGAAAACATGGTGCATAGGCAGGTGCGGATTTGATTTCACATTATTCGCTCGTTTTCTGCTCCCTAACCCCACCATGAGCCATGTACAGTGTTTGCGGATTATCTGTGGACTGATTTAACATCTGCTTTTGCTAActgtgaaatttttttcttcctttttttgggGTCAGTCTGGAATTTTCTTGGTTTCAGTTGGCGCTTTAGCTTAGCATTATCGCTGCATCCCTTTTCTACCGGCCCGAAACTACACACAGGCCACAGCGATGCGGACTTTACTACAGCCTTAATTTCtctggggaagaaaaaaaaaaaaaaccatttcgGTTTAGTGAAGGAAAGGAGCTTTACATATTTTATGGACGTGACGGATAGCTAGTAGCCGCTTCTCAGAGCAAGGGGAAAAATGCTGAATTCGAGGCGGCTGTTGCGGCTTTCCAACCGCTCCTTCTTggccttcatttttttcttctccatgtCTACGACCTGTCTCTACTTCATTTATGTGGCCCCTGGAATAGCCAACACATACTTCTTCATGGTGCAGGCTCAGGGTATAATGTTACGTGATAACGTGCGGACGATTGGCCAGATAATCAGATCATACACCAATAAGAACAGCACTCTGAATGGCACAGATTATCCTGATGGGAACAACTCCAGCGAATATTTTGCTCAACCAACTACATACCTCCCTGAGAATTTCACCTATGCCCAGAACTTGCCCTGCCCTGAACGATTACCTTCTATGAAGGGTCCTATGGAAGTAAATATGACCGAGGTTCCTATAGAGGAGGTGGAACTGCAGCTTAGACAGCTGGGCATTCAGTTTGGGGGACACTGGAAGCCCAAGGACTGCAAACCACGCTGGAAGGTGGCTATTCTGATCCCCTTTAGGAATCGTCACGAACATCTTCCCATTCTGTTTCAGCACCTTGCTCCCATGCTCCAACGGCAGCGCTTACAGTTTGCATTTTATGTAATTGAGCAGGCAGGTACGCAGCCTTTTAACCGAGCCATGCTTTTTAACGTGGGTTTCAAGGAGGCAATGAAAGACCTGGCCTGGGACTGTGTGGTTTTTCACGATGTCGATCATATCCCTGAAAATGACCGGAATTATTACGGCTGCGGGCAGATGCCTCGTCACTTCGCCACAAAGCTCGACAAGTACATGTACCTtttgcCCTACAGTGAGTTCTTTGGAGGAGTGAGTGGGCTTACAGCAAAGCAGTTCCGCAAGATCAATGGTTTTCCCAATGCATTCTGGGGCTGGGGAGGGGAGGATGATGACCTCTGGAACAGGGTGCACTTCACTGGCTTGAATGTGACCAGACCTGAAGGAGATATTGGTAAATACAAGTCAATTCCCCATCACCACCGAGGAGAAGTGCAGTTCCTGGGAAGgtaCAAGTTGCTGAGGTATTCTAAAGAAAGGCAATATTTGGATGGCCTAAATAATCTCCAGTATTCTCCGGAAATCTCTTTAAGTAGTCTGTATAAGAACATCACTGTTAACCTGAGCCCTGAGCTTGCCCCCATAGCGGAGTACTGACACCTgtctctccatcctctccacCTGGCCATCAGTACCTGAAGACGACCGACCCAGCATCGTGGAGAAGAGTGTGGTCTGAACATCGCATACGGCCACCAAGTAACCTTAAACCCAAGAGACAAAAGGTTAAAGGCCCGAATACTAAAATGATTGTGCGTGTGTGAAGTCATACCTATGTTTTTGTGAGCGTGTGCGTCCCAATGCATGTCTCTGTTTATGCGGCTTTAGCTACTCAAATCACATCATGCTAcgaaaaaaaaggaggaaggaGAAATTGGGGTGTGTCAGTGTCAACTATTCAAATGTTTACTGCGAAGCCTTAACTGATTTTCATAGGCTGTTATCACTCTGAGTGTCGGTTCTCATCCATGCCAACAATGTAGACTGCTCAGTTTTACAACTCAACAGCAACGTAAATGCCAATAGCTATTTTATGGCACGTTTTGTATCATATTGTAGTATTTTAATGCATATGATGAtttatgtatgtactgtaaatggtcttttttttggccttccttatttattattattatttttttttagtttcttgaGATGTACTTTTGAGCACTCCAgtggtgtgtgtaatgtgagcgTCACGTTTTCTTTTGTGGGCTGTGAGTGCACGAAGGATCACGACTGCTCACTTGATCCTGTAATGTCATACATCATTCCAGTGCACATACTCTTACTTTGGCAGCTAACTGTCTTTTCATTAACCCTCTACTCTGTCTTTCCTTATACAAATGGACGCTTCAACTTAAGGACTAAAGACAAATGAAATTGGGATGAGTGGTCTATTAAACAAAACACCAATATCA

Function

symbol description
b4galt6 Enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Acts upstream of or within glycosphingolipid metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT6 (beta-1,4-galactosyltransferase 6).

NR:

description
beta-1,4-galactosyltransferase 6-like isoform X1

GO:

id name namespace
GO:0006687 glycosphingolipid metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0008489 UDP-galactose molecular_function

KEGG:

id description
K07553 B4GALT6; beta-1,4-galactosyltransferase 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU344338 False 1925 lncRNA 0.38 2 6135952 6160040
XM_026944686.2 True 2622 mRNA 0.45 9 6135920 6156764

Neighbor

gene id symbol gene type direction distance location
trappc8 trappc8 coding upstream 8018 6090426 ~ 6127902 (+)
mcm3l mcm3l,LOC108258154,LOC108416133,LOC107712296,LOC107697457 coding upstream 60875 6068607 ~ 6075045 (+)
igfbp1a LOC100305121 coding upstream 174735 5958431 ~ 5961185 (+)
adcy1a adcy1a,LOC108257925,LOC108416099,LOC107581454,LOC107559745,LOC107697434,LOC107687179,LOC107712833 coding upstream 190434 5904694 ~ 5945486 (+)
sirt5 sirt5,LOC107687181,LOC107712885 coding upstream 248361 5875188 ~ 5887559 (+)
dsc2l NA coding downstream 54701 6214741 ~ 6230552 (+)
cdh2 cdh2,LOC108258170,LOC108416271,LOC107561048,LOC107746014,LOC107571545,LOC107701519 coding downstream 301688 6461728 ~ 6504131 (+)
aqp4 LOC108257544,LOC108414838 coding downstream 462887 6622927 ~ 6629974 (+)
kctd1 kctd1,LOC108257545,LOC108414594,LOC107723550,LOC107746021,LOC103031849,LOC107701518,LOC107684804,LOC106599692,LOC106534090 coding downstream 480927 6640967 ~ 6660584 (+)
taf4b LOC108258144 coding downstream 501840 6661880 ~ 6676354 (+)
LOC117599801 NA non-coding upstream 316854 5815902 ~ 5819066 (+)
G290569 NA non-coding upstream 328004 5807006 ~ 5807916 (+)
G290567 NA non-coding upstream 330332 5804676 ~ 5805588 (+)
G290566 NA non-coding upstream 331580 5801798 ~ 5804340 (+)
G290562 NA non-coding upstream 401620 5732731 ~ 5734300 (+)
G290699 NA non-coding downstream 77674 6237714 ~ 6237916 (+)
G290863 NA non-coding downstream 182223 6342263 ~ 6342540 (+)
G290879 NA non-coding downstream 262632 6422672 ~ 6422966 (+)
G290935 NA non-coding downstream 553887 6713927 ~ 6727514 (+)
G291037 NA non-coding downstream 674367 6834407 ~ 6834698 (+)
usp24 usp24 other upstream 334227 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 1156520 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 1526319 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 1797621 4328832 ~ 4338299 (+)
clocka clock,LOC107701480 other upstream 1825991 4248330 ~ 4309929 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 852702 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 1617557 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1883346 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 2328607 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 2833473 8993513 ~ 8996996 (+)

Expression


Co-expression Network