G290699


Basic Information

Item Value
gene id G290699
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6237714 ~ 6237916 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU344375
atatactcaAATATGTGCTTATTTTAAATGTCAATACCACCGCAGACATGCAAACATTATTGAAATTGGTGTGGAGAACTCTAACCTTACACTACATACACTGGTTTCAATGATTGTGTTATCACACTTAGCTTCTTGTACCCATTCATCTGTTAACTCTATATGGGTTTATGTGACTTGGATATTTTTTAGTTACTCAAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU344375 True 203 lncRNA 0.33 1 6237714 6237916

Neighbor

gene id symbol gene type direction distance location
dsc2l NA coding upstream 7162 6214741 ~ 6230552 (+)
trappc8 trappc8 coding upstream 109812 6090426 ~ 6127902 (+)
mcm3l mcm3l,LOC108258154,LOC108416133,LOC107712296,LOC107697457 coding upstream 162669 6068607 ~ 6075045 (+)
igfbp1a LOC100305121 coding upstream 276529 5958431 ~ 5961185 (+)
adcy1a adcy1a,LOC108257925,LOC108416099,LOC107581454,LOC107559745,LOC107697434,LOC107687179,LOC107712833 coding upstream 292228 5904694 ~ 5945486 (+)
cdh2 cdh2,LOC108258170,LOC108416271,LOC107561048,LOC107746014,LOC107571545,LOC107701519 coding downstream 223812 6461728 ~ 6504131 (+)
aqp4 LOC108257544,LOC108414838 coding downstream 385011 6622927 ~ 6629974 (+)
kctd1 kctd1,LOC108257545,LOC108414594,LOC107723550,LOC107746021,LOC103031849,LOC107701518,LOC107684804,LOC106599692,LOC106534090 coding downstream 403051 6640967 ~ 6660584 (+)
taf4b LOC108258144 coding downstream 423964 6661880 ~ 6676354 (+)
LOC113545329 LOC108257524 coding downstream 453718 6691634 ~ 6699817 (+)
LOC117599801 NA non-coding upstream 418648 5815902 ~ 5819066 (+)
G290569 NA non-coding upstream 429798 5807006 ~ 5807916 (+)
G290567 NA non-coding upstream 432126 5804676 ~ 5805588 (+)
G290566 NA non-coding upstream 433374 5801798 ~ 5804340 (+)
G290562 NA non-coding upstream 503414 5732731 ~ 5734300 (+)
G290863 NA non-coding downstream 104347 6342263 ~ 6342540 (+)
G290879 NA non-coding downstream 184756 6422672 ~ 6422966 (+)
G290935 NA non-coding downstream 476011 6713927 ~ 6727514 (+)
G291037 NA non-coding downstream 596491 6834407 ~ 6834698 (+)
LOC117599731 NA non-coding downstream 692453 6930369 ~ 6933860 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 77674 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 436021 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 1258314 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 1628113 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 1899415 4328832 ~ 4338299 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 774826 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 1539681 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1805470 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 2250731 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 2755597 8993513 ~ 8996996 (+)

Expression


Co-expression Network