G291096 (xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046)


Basic Information

Item Value
gene id G291096
gene name xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 6981963 ~ 6982804 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU344857
TGCAGGATGTGGATGAGCGTCTGCCAGATCCAGACGGAGATGCGGCAGCACCTGCCGCGGCCGCGGGAACCCGCCGTGGCTCTCCGGGTGCTCAGCCCTTCCACGGAGCCCAAGCCTCCTCCCGTGTAATCCTGCACGAACCACCTGAAGCTCAGTATCTGCACGAGCACGGACGGCACGAGCACGAAGAAGAGCGTGAGCCCGAACCAGAGGTAGTCCTGCTTGACGTAGTAGTCGGCCGCCAGCCACAGGTCGGTGCCCACGTCCCAGAAGAAGACGAGCAGCGCCAGCACGATCCACAGGCAGTCGAGCCAGAGGCGCTCCTCCCGCGCCGGCCGCGCGCCCTCCCGCCCCTTACCCAGCAGGTAGTGCAGGCATGCGCTCCGGCAGCCCCAGTAGCACGAGGACGTGTTGCAGCAGTGGCAGATGTGCAGTGAGCTGCCCTCCCGCGGGTAGTCCTCGCCGCAGCCGCCGCCCGCCGCCTCGTCCAGGTTGTGCAGCTGGGCAAAGCCGGTGGCTGTGGCGAGCCCCCGACCGTCGGATTTCGCTGCCATCTTGCTCTCCCAAACGCCCGCCTCCGGCTTCCGCGGCTTGTGACGTCACTTCCCCGACACCTGTCTTGCGCGAGCGCGCCTAACGAGGTAGCCATCTAGGTCCGGGGTGACCGTGGCGCAGCGTCGACCAGTGCCAGCTCCCTGCACCGCCGCGTCCTGACACCGCACAGGCCGAGCATCTTCTTCCGCACAGCTGGACTTGAGCCTGGTTTTATGGCCTGATAGATGCACCACGACGCACCTGGTATATGGCTTTGATATGAACACAGGTTGGAGAATAAGCTCCAA

Function

symbol description
xkr6b Predicted to be involved in apoptotic process involved in development; engulfment of apoptotic cell; and phosphatidylserine exposure on apoptotic cell surface. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in female organism. Orthologous to human XKR6 (XK related 6).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU344857 True 842 lncRNA 0.65 1 6981963 6982804

Neighbor

gene id symbol gene type direction distance location
fam167ab fam167a,LOC108258093,LOC108435018 coding upstream 70775 6905521 ~ 6911188 (+)
eif5 eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513 coding upstream 88610 6884303 ~ 6893353 (+)
LOC113545215 NA coding upstream 113932 6850356 ~ 6868031 (+)
tnfaip2a NA coding upstream 133430 6833386 ~ 6848533 (+)
si:dkeyp-72h1.1 LOC108257513,LOC108411900 coding upstream 174622 6797339 ~ 6807341 (+)
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding downstream 4305 6987109 ~ 7003630 (+)
pinx1 LOC107589051 coding downstream 41203 7024007 ~ 7049333 (+)
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding downstream 71154 7053958 ~ 7057627 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding downstream 113337 7096141 ~ 7106016 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding downstream 135887 7118691 ~ 7147134 (+)
G291058 LOC103367973 non-coding upstream 42344 6939191 ~ 6939619 (+)
LOC117599731 NA non-coding upstream 48103 6930369 ~ 6933860 (+)
G291037 NA non-coding upstream 147265 6834407 ~ 6834698 (+)
G290935 NA non-coding upstream 254449 6713927 ~ 6727514 (+)
G290879 NA non-coding upstream 558997 6422672 ~ 6422966 (+)
G291109 NA non-coding downstream 75579 7058383 ~ 7058583 (+)
G291274 snx17,LOC107746210 non-coding downstream 237502 7220306 ~ 7227227 (+)
G291300 NA non-coding downstream 278246 7261050 ~ 7262111 (+)
G291380 NA non-coding downstream 421624 7404428 ~ 7405105 (+)
G291423 NA non-coding downstream 506504 7489308 ~ 7520858 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 821923 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1180270 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2002563 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2372362 4601055 ~ 4609601 (+)
trnad-guc_17 NA other upstream 2643664 4328832 ~ 4338299 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other downstream 29938 7012742 ~ 7019686 (+)
atp5mpl NA other downstream 794793 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 1060582 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1505843 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 2010709 8993513 ~ 8996996 (+)

Expression


Co-expression Network