G291109


Basic Information

Item Value
gene id G291109
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7058383 ~ 7058583 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU344873
CGGGCGTTTGACAAATCCTGGAGTCTGGCTTGGTCTTCCTGCGTTTTTTGGGAACGGTTGAGTCGCGTTCCTTGTAAAGAGGATGTAGCGGAGGAGCAGTGTTTCCTGCCTGATAAGAGTAAAGCCTCTCTCCGTCAGGATGTTTGGGCCCTGGCTGGTCCGTGCATTAAAAGAGCCCATGGCAAGGGAAAGGGAACCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU344873 True 201 lncRNA 0.54 1 7058383 7058583

Neighbor

gene id symbol gene type direction distance location
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding upstream 756 7053958 ~ 7057627 (+)
pinx1 LOC107589051 coding upstream 9050 7024007 ~ 7049333 (+)
mtmr9 mtmr9,LOC107701508,LOC107746110,LOC107723304 coding upstream 54753 6987109 ~ 7003630 (+)
fam167ab fam167a,LOC108258093,LOC108435018 coding upstream 147195 6905521 ~ 6911188 (+)
eif5 eif5,LOC108258083,LOC108435020,LOC107746071,LOC103022293,LOC107723356,LOC105897773,LOC107701513 coding upstream 165030 6884303 ~ 6893353 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding downstream 37558 7096141 ~ 7106016 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding downstream 60108 7118691 ~ 7147134 (+)
znf513a LOC108257870 coding downstream 150104 7208687 ~ 7219656 (+)
atraid atraid coding downstream 187589 7246172 ~ 7249822 (+)
nme6 nme6 coding downstream 205343 7263926 ~ 7276146 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 75579 6981963 ~ 6982804 (+)
G291058 LOC103367973 non-coding upstream 118764 6939191 ~ 6939619 (+)
LOC117599731 NA non-coding upstream 124523 6930369 ~ 6933860 (+)
G291037 NA non-coding upstream 223685 6834407 ~ 6834698 (+)
G290935 NA non-coding upstream 330869 6713927 ~ 6727514 (+)
G291274 snx17,LOC107746210 non-coding downstream 161723 7220306 ~ 7227227 (+)
G291300 NA non-coding downstream 202467 7261050 ~ 7262111 (+)
G291380 NA non-coding downstream 345845 7404428 ~ 7405105 (+)
G291423 NA non-coding downstream 430725 7489308 ~ 7520858 (+)
G291434 NA non-coding downstream 463341 7521924 ~ 7522123 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 38697 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 898343 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1256690 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2078983 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2448782 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 719014 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 984803 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1430064 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1934930 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 2015445 9074028 ~ 9179173 (+)

Expression


Co-expression Network