G291274 (snx17,LOC107746210)


Basic Information

Item Value
gene id G291274
gene name snx17,LOC107746210
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7220306 ~ 7227227 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU345070
GCAGAGATTTGGCACCTACATTTATTGAAATCCATGACAttgcttttaaatttttaaagaacTGCTAGGCTCTGTGTGACATTAAGAATCTATACCATTAACATCTTTTAGATATGCTGGTGAACATACTGAAGTTGACACTCACATATTATAATaagtcagaaaacattcacTCTTTACAGTTGATCAAGATGAGAATGAGCTCTTCAATCACCAAGACCTAGACAAGTTAGACAAATTTCAATCATCTTCAATGTCAAAACTCAGTCAGTCTTGTTCCCACTGCATTGTATAAACACGACTCACGCTGGAATACACGGCTCTGGAATGAAGGTTCTCATTTGccatgcaaagaaaaaaaaaaaaaaaaaaacaacaaaaaaaaaaacaccagcctGAAATATGAAATGCAGCTTTTTTCCAACCTCCTTTTCTACCCGGTCCTCTGAGATGATTGCTACAATGTGTTTTATAAAGCACAAAATGGTCTTTatggttttcaaaaaaaaaggaatatgtaATGAGTAAAAAGACAACCATTGAAATTCAGATGTGGAATTTGTAAACACTGTTCTTTCAAATTCTATTCTCAATTTTCTACAGTTCTGTAAACAGCGGTAtatgttctttttgtttttttatttatttatttttttacaaccCTTTAACATAAAGCTGATACTGTTATACAACCCTTCGACAAAGCTGACACTTACAGATGAAGTGACTCGCCAGCACCTCATGCGTGTGACTTTAAAGCTGCCTTCCTTCATCTGGTTGTTGGGCAGTTTGACGTGAAAGTTGAGCTCGTTGTTGCCGGCGCTGACGATGACGTGGCAACCTTTTTCGGGAAAATCCGTGATGCAGGGATCAAACTTGATATAGCCAAAATACTTCAGGGTCTGAGCCAATCTGATGAACTATGAAAGCAACGTGGATTAAA

Function

symbol description
snx17 Predicted to enable phosphatidylinositol binding activity. Predicted to be involved in intracellular protein transport. Predicted to act upstream of or within protein transport and signal transduction. Predicted to be located in cytoplasmic vesicle and cytosol. Predicted to be active in early endosome. Is expressed in brain; eye; liver; and pancreas. Orthologous to human SNX17 (sorting nexin 17).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU345070 True 943 lncRNA 0.36 2 7220306 7227227

Neighbor

gene id symbol gene type direction distance location
znf513a LOC108257870 coding upstream 650 7208687 ~ 7219656 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding upstream 73172 7118691 ~ 7147134 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding upstream 114290 7096141 ~ 7106016 (+)
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding upstream 162679 7053958 ~ 7057627 (+)
pinx1 LOC107589051 coding upstream 170973 7024007 ~ 7049333 (+)
atraid atraid coding downstream 18945 7246172 ~ 7249822 (+)
nme6 nme6 coding downstream 36699 7263926 ~ 7276146 (+)
si:ch211-142k18.1 LOC108257612 coding downstream 111852 7339079 ~ 7344915 (+)
chrna2b chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726 coding downstream 120928 7348155 ~ 7356914 (+)
rhoj rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308 coding downstream 251055 7478282 ~ 7502438 (+)
G291109 NA non-coding upstream 161723 7058383 ~ 7058583 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 237502 6981963 ~ 6982804 (+)
G291058 LOC103367973 non-coding upstream 280687 6939191 ~ 6939619 (+)
LOC117599731 NA non-coding upstream 286446 6930369 ~ 6933860 (+)
G291037 NA non-coding upstream 385608 6834407 ~ 6834698 (+)
G291300 NA non-coding downstream 33823 7261050 ~ 7262111 (+)
G291380 NA non-coding downstream 177201 7404428 ~ 7405105 (+)
G291423 NA non-coding downstream 262081 7489308 ~ 7520858 (+)
G291434 NA non-coding downstream 294697 7521924 ~ 7522123 (+)
LOC113545343 NA non-coding downstream 383260 7610487 ~ 7614980 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 200620 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1060266 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1418613 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2240906 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2610705 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 550370 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 816159 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1261420 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1766286 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1846801 9074028 ~ 9179173 (+)

Expression


Co-expression Network