G291300


Basic Information

Item Value
gene id G291300
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7261050 ~ 7262111 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU345097
GGCAACAACTGGATGTTCTTCTCTGCACAGACAAAGTGTCCTGTCATATGGCACTGTGTAAGCCCTACAGTAACTTTGTAGTAGTTTTGAGCAGAACAGTGGAGGTAATATACATGCAGCATGGctcataaagtaaaaaaaaaattagggaaAGGAAAATGGCTATTCAGGTCTATCTACCTATATTGGGTAAGCATTTCGCAGTCATTTATGAAATAACCTCAAATGTACTGTCATTGTACAATAGTAACTGAAATTGAAGATTACCTGTCCTGGATGTCACCGGAGTCCTgctttgtgtatttgttgtcATCATCAACGGTTTCGCTGGTGTTGTTAAGTAAAGTAACGGCTACAGAGAGGTGTGTAAGGTATATTTAGCTCTATTAAGCAAATGTAGAACAATCTCCTCTTGAGCTTGAATGTTGTCAACCTGCAGAACTAGAAATGCCATCGTTGAACTGTATCGCTGCCTTTTACTTTGCAGAGGTGTGGAAAAGTGCTGTTAGCCTACAGTAGATCAAAGGTAAGCAATGGCAAGTGTGAGGTTGATGACACTCCTACATCTGCTTCCTCCCAGCACACCTTTTCACATGGATTACTTCTGTCAAACGTGTGATATCCTGCATTTGTGGGTTTGATAATAAAGCAGGGATCCATTAAGTAATATTATCCAAATCCAAGCCTTAATCGAATCTTCATTAGATTAAATTTAACGAAGGAAGGTGCCGCTGCTGGATCTTAAGCAAAAATGACCTCTCTTTTACAAACAGACTACTACctctttctttaaataatgaaaagtcTTATGATGGATTAATCTAATACTGATGACGTAGTGATATGTTTATCTTTAAGAGCTAGACTGTTAATCACTCAATGGTAATAGCAGTACCTGACCACTTACatacagaacaaaacaaaacaaaacaaaaaacttcgtagcttttctaaacattttaacaCCTCTCTCTAAAAGTTTGTCCCAATAATTTAATGATCTTCtccacacctctctctctctgtcccgcTTTGTCCCATCCTCCTCTTAGCCCAGCTTGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU345097 True 1062 lncRNA 0.39 1 7261050 7262111

Neighbor

gene id symbol gene type direction distance location
atraid atraid coding upstream 11228 7246172 ~ 7249822 (+)
znf513a LOC108257870 coding upstream 41394 7208687 ~ 7219656 (+)
fndc4a fndc4,LOC107589087,LOC107723530,LOC106923250 coding upstream 113916 7118691 ~ 7147134 (+)
blk blk,LOC108258139,LOC108435007,LOC107589086,LOC107746144,LOC107684815,LOC107701472 coding upstream 155034 7096141 ~ 7106016 (+)
sox7 sox7,LOC107561931,LOC107701473,LOC107684791 coding upstream 203423 7053958 ~ 7057627 (+)
nme6 nme6 coding downstream 1815 7263926 ~ 7276146 (+)
si:ch211-142k18.1 LOC108257612 coding downstream 76968 7339079 ~ 7344915 (+)
chrna2b chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726 coding downstream 86044 7348155 ~ 7356914 (+)
rhoj rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308 coding downstream 216171 7478282 ~ 7502438 (+)
trnac-gca_25 NA coding downstream 327257 7589368 ~ 7589439 (+)
G291274 snx17,LOC107746210 non-coding upstream 33823 7220306 ~ 7227227 (+)
G291109 NA non-coding upstream 202467 7058383 ~ 7058583 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 278246 6981963 ~ 6982804 (+)
G291058 LOC103367973 non-coding upstream 321431 6939191 ~ 6939619 (+)
LOC117599731 NA non-coding upstream 327190 6930369 ~ 6933860 (+)
G291380 NA non-coding downstream 142317 7404428 ~ 7405105 (+)
G291423 NA non-coding downstream 227197 7489308 ~ 7520858 (+)
G291434 NA non-coding downstream 259813 7521924 ~ 7522123 (+)
LOC113545343 NA non-coding downstream 348376 7610487 ~ 7614980 (+)
G291581 NA non-coding downstream 403018 7665129 ~ 7666009 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 241364 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1101010 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1459357 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2281650 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2651449 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 515486 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 781275 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1226536 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1731402 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1811917 9074028 ~ 9179173 (+)

Expression


Co-expression Network