G291380


Basic Information

Item Value
gene id G291380
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7404428 ~ 7405105 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU345188
CTCAGGTACATGAAAAAGAGTTTAATAAATGCAGTGTCTCACGCAATCCAAAAGGAAGAGCCTGGGCAGAGTCCTTCAGCCAAAAGACAATGTCCATTTGCAACAAGTAAATGCTGTACCATGCAGCAGAGCTGTGTAGGGTATTAATATGATATAGAATATGGGGGAGAAATAGCATGCTATATTGTAAAGCCCCTCCTCTTTAAAACAACACCCAGCTATAGATTATTTATAATACTTGGCTGCTGTGTTTGCTGACTACACACAATGGTACAGTATCACTTGGTGCATCATCTACACTTCCCAGCGCTAAAAGTCTTCTCTCCCAGGCCCCCTTGCAATTCGTACATGTGTGAAAAAATTTGCAGCAAAGTACTACTTTGGCAGGCAAACATCATTCTCACTGGCATCAAGTTTTGGACACATCAAAAATGCAGCATGCAGTCAAACGCCTACTTCTTCCCTGTGCAAATTTCTGTAGCTCCATTGTGCATCAGGGAAATGGAGACTAACCTTCCCATTTAGTAGTTCTGATGCCTGGCAGGGCAAAAACCAGGCTGGCTTTCAAAAGGCATATTCTAAATTTACAAGGCTGAGGTCGACGATTAAAAATgagcaatgtttttgttaaaacaaaCGATCGTTTAGCATCTCAATGgccataaaatgttaatattc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU345188 True 678 lncRNA 0.41 1 7404428 7405105

Neighbor

gene id symbol gene type direction distance location
chrna2b chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726 coding upstream 47514 7348155 ~ 7356914 (+)
si:ch211-142k18.1 LOC108257612 coding upstream 59513 7339079 ~ 7344915 (+)
nme6 nme6 coding upstream 128282 7263926 ~ 7276146 (+)
atraid atraid coding upstream 154606 7246172 ~ 7249822 (+)
znf513a LOC108257870 coding upstream 184772 7208687 ~ 7219656 (+)
rhoj rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308 coding downstream 73177 7478282 ~ 7502438 (+)
trnac-gca_25 NA coding downstream 184263 7589368 ~ 7589439 (+)
six4b LOC108258176,LOC108434989 coding downstream 218116 7623221 ~ 7629922 (+)
six1b six1b,six1,LOC108257556,LOC107697302,LOC107589069,LOC107563694 coding downstream 231080 7636185 ~ 7639104 (+)
rtn1b rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379 coding downstream 319201 7724306 ~ 7767694 (+)
G291300 NA non-coding upstream 142317 7261050 ~ 7262111 (+)
G291274 snx17,LOC107746210 non-coding upstream 177201 7220306 ~ 7227227 (+)
G291109 NA non-coding upstream 345845 7058383 ~ 7058583 (+)
G291096 xkr6b,LOC108258067,LOC107684793,LOC107723320,LOC107561941,LOC107589046 non-coding upstream 421624 6981963 ~ 6982804 (+)
G291058 LOC103367973 non-coding upstream 464809 6939191 ~ 6939619 (+)
G291423 NA non-coding downstream 84203 7489308 ~ 7520858 (+)
G291434 NA non-coding downstream 116819 7521924 ~ 7522123 (+)
LOC113545343 NA non-coding downstream 205382 7610487 ~ 7614980 (+)
G291581 NA non-coding downstream 260024 7665129 ~ 7666009 (+)
G291582 six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477 non-coding downstream 261814 7666919 ~ 7667805 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 384742 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1244388 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1602735 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2425028 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 2794827 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 372492 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 638281 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 1083542 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1588408 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1668923 9074028 ~ 9179173 (+)

Expression


Co-expression Network