G291582 (six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477)


Basic Information

Item Value
gene id G291582
gene name six6b,six6,LOC108257662,LOC107743981,LOC107697293,LOC107589092,LOC103035477
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047613.1
NCBI id CM018559.1
chromosome length 22090854
location 7666919 ~ 7667805 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU345444
ATTTTATTGAGTAATATGTGTGCACAGGAggcatgtgttatttattggGAGTTGAAGAACACACCTGTTCTTCGCGGCTGCTGCTCTGTCCCTTTGTCTTCGGTTTTTAAACCAGTTGCCCACTTGAGTAGGAGTAAGTCCTGTGGCTTGTGCAAGCTCCCTCTTTTTGCTCGGGTTCGGATAAGGGTCCTGCAGATACCATTCCCTCAGCAAATGTCTGGTCCTTTCTTTGAAGCAGTGCGTCTTTTGTTCTCCGTCCCAAATAGTTTTGGGCAGTGGAAACTTCTTCCGCACCCTGTATTTATCTACCGGCCCTAGCGGGCGGCCCCGGAGCTTTTCCGCCTCCCGGTAGTGCGACTCGAGCCACAGAGCTTGCAGTTTGGAATGCGAGTCTTTGGTGAATTTGTGGTTCTCCAGGATGTGGTAAAGCTCGCGGAAGTTGCCGGTGTGGAAGGCCACGATGGCGCGCGCTCGCAGCACCGACTCGTTCCGGTTTAGCACCTCGCAGGCGGCGGGCGCCACAGGCAGCGACCACAGGAACCGACCGAGGCGCTCGATGTCGCCGCTTTCCTCCAGAGTCTCACACACCCCCGCTACCTGCTGGGGGCTGAAATTCAGCATTGGCAACTGAAACATGAAGGCTGCACTTTTTCCCCGCCTCGAGGTGCTCCGTCTCGCGTGCTCGCGCACACTTGTGTCGCGTTATGGTGCCTCTtcgtctctctccctctccaacGCAGACAGGCAGAAACGCAATGGCGGAGAGAGGAGACGAGCCGTTAGAGGATgctgagatgagagagatggatggtGCCACACTTGGCCGACTGTCTCAGCCTCGGAAGGCGATATGGAGAGCTGGAGTGAGCGAGAATATAGCGCAGCAG

Function

symbol description
six6b Enables double-stranded DNA binding activity. Involved in gene expression. Acts upstream of or within camera-type eye development and cell population proliferation. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in brain; eye; and kidney. Human ortholog(s) of this gene implicated in optic disc anomalies with retinal and/or macular dystrophy. Orthologous to human SIX6 (SIX homeobox 6).
six6 Enables RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in eye development and regulation of transcription by RNA polymerase II. Predicted to be part of chromatin and transcription regulator complex. Predicted to be active in nucleus. Implicated in optic disc anomalies with retinal and/or macular dystrophy.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU345444 True 887 lncRNA 0.56 1 7666919 7667805

Neighbor

gene id symbol gene type direction distance location
six1b six1b,six1,LOC108257556,LOC107697302,LOC107589069,LOC107563694 coding upstream 27815 7636185 ~ 7639104 (+)
six4b LOC108258176,LOC108434989 coding upstream 36997 7623221 ~ 7629922 (+)
trnac-gca_25 NA coding upstream 77480 7589368 ~ 7589439 (+)
rhoj rhoj,LOC108257930,LOC107707080,LOC107743974,LOC107701469,LOC107697308 coding upstream 164481 7478282 ~ 7502438 (+)
chrna2b chrna2b,LOC108257653,LOC108434998,LOC106571024,LOC103363535,LOC102297948,LOC105897726 coding upstream 310005 7348155 ~ 7356914 (+)
rtn1b rtn1b,LOC108257846,LOC105897731,LOC108434986,LOC107589072,LOC107560379 coding downstream 56501 7724306 ~ 7767694 (+)
rd3l LOC108257848 coding downstream 106687 7774492 ~ 7776361 (+)
ppp1r13bb ppp1r13b,LOC108434983 coding downstream 117617 7785422 ~ 7832026 (+)
trnaa-cgc_5 NA coding downstream 215413 7883218 ~ 7883289 (+)
trnaa-cgc_6 NA coding downstream 216840 7884645 ~ 7884716 (+)
G291581 NA non-coding upstream 910 7665129 ~ 7666009 (+)
LOC113545343 NA non-coding upstream 51939 7610487 ~ 7614980 (+)
G291434 NA non-coding upstream 144796 7521924 ~ 7522123 (+)
G291423 NA non-coding upstream 146061 7489308 ~ 7520858 (+)
G291380 NA non-coding upstream 261814 7404428 ~ 7405105 (+)
G291644 NA non-coding downstream 165525 7833330 ~ 7837080 (+)
LOC117599748 NA non-coding downstream 278147 7945952 ~ 7948031 (+)
G291769 NA non-coding downstream 458216 8126021 ~ 8127898 (+)
G291907 LOC108412077,LOC108257948,LOC101069770 non-coding downstream 641437 8309242 ~ 8321459 (+)
G291972 NA non-coding downstream 797032 8464837 ~ 8465037 (+)
tdh tdh,LOC107561940,LOC103024478,LOC108435012,LOC107723287 other upstream 647233 7012742 ~ 7019686 (+)
b4galt6 b4galt6,LOC107712262,LOC107687169,LOC107712895 other upstream 1506879 6135920 ~ 6160040 (+)
usp24 usp24 other upstream 1865226 5735473 ~ 5801693 (+)
dnm3a dnm3,dnm3a other upstream 2687519 4941951 ~ 4979400 (+)
LOC113545190 NA other upstream 3057318 4601055 ~ 4609601 (+)
atp5mpl NA other downstream 109792 7777597 ~ 7782008 (+)
nudt14 nudt14,LOC107718404,LOC107683965 other downstream 375581 8043386 ~ 8074444 (+)
LOC113545369 NA other downstream 820842 8488647 ~ 8534500 (+)
G292216 trmt6 other downstream 1325708 8993513 ~ 8996996 (+)
LOC113545247 plcb1,LOC108258091 other downstream 1406223 9074028 ~ 9179173 (+)

Expression


Co-expression Network